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HIST3H3 (histone cluster 3 H3)

Identity

Alias_namesH3FT
H3 histone family, member T
histone 3, H3
histone cluster 3, H3
Alias_symbol (synonym)H3t
H3/g
H3.4
Other alias
HGNC (Hugo) HIST3H3
LocusID (NCBI) 8290
Atlas_Id 49985
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228424845 and ends at 228425325 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to &nbSp;How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIST3H3   4778
Cards
Entrez_Gene (NCBI)HIST3H3  8290  histone cluster 3 H3
AliasesH3.4; H3/g; H3FT; H3t
GeneCards (Weizmann)HIST3H3
Ensembl hg19 (Hinxton)ENSG00000168148 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168148 [Gene_View]  chr1:228424845-228425325 [Contig_View]  HIST3H3 [Vega]
ICGC DataPortalENSG00000168148
TCGA cBioPortalHIST3H3
AceView (NCBI)HIST3H3
Genatlas (Paris)HIST3H3
WikiGenes8290
SOURCE (Princeton)HIST3H3
Genetics Home Reference (NIH)HIST3H3
Genomic and cartography
GoldenPath hg38 (UCSC)HIST3H3  -     chr1:228424845-228425325 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIST3H3  -     1q42.13   [Description]    (hg19-Feb_2009)
EnsemblHIST3H3 - 1q42.13 [CytoView hg19]  HIST3H3 - 1q42.13 [CytoView hg38]
Mapping of homologs : NCBIHIST3H3 [Mapview hg19]  HIST3H3 [Mapview hg38]
OMIM602820   
Gene and transcription
Genbank (Entrez)AK312217 BC069079 BC101837 BC101839 CR542013
RefSeq transcript (Entrez)NM_003493
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIST3H3
Cluster EST : UnigeneHs.248171 [ NCBI ]
CGAP (NCI)Hs.248171
Alternative Splicing GalleryENSG00000168148
Gene ExpressionHIST3H3 [ NCBI-GEO ]   HIST3H3 [ EBI - ARRAY_EXPRESS ]   HIST3H3 [ SEEK ]   HIST3H3 [ MEM ]
Gene Expression Viewer (FireBrowse)HIST3H3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8290
GTEX Portal (Tissue expression)HIST3H3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ16695   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ16695  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ16695
Splice isoforms : SwissVarQ16695
PhosPhoSitePlusQ16695
Domaine pattern : Prosite (Expaxy)HISTONE_H3_1 (PS00322)   
Domains : Interpro (EBI)Histone-fold    Histone_H2A/H2B/H3    Histone_H3/CENP-A   
Domain families : Pfam (Sanger)Histone (PF00125)   
Domain families : Pfam (NCBI)pfam00125   
Domain families : Smart (EMBL)H3 (SM00428)  
Conserved Domain (NCBI)HIST3H3
DMDM Disease mutations8290
Blocks (Seattle)HIST3H3
PDB (SRS)2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
PDB (PDBSum)2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
PDB (IMB)2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
PDB (RSDB)2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
Structural Biology KnowledgeBase2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
SCOP (Structural Classification of Proteins)2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
CATH (Classification of proteins structures)2V1D    2YBP    2YBS    3A6N    3T6R    4V2V    4V2W   
SuperfamilyQ16695
Human Protein AtlasENSG00000168148
Peptide AtlasQ16695
HPRD04156
IPIIPI00216402   
Protein Interaction databases
DIP (DOE-UCLA)Q16695
IntAct (EBI)Q16695
FunCoupENSG00000168148
BioGRIDHIST3H3
STRING (EMBL)HIST3H3
ZODIACHIST3H3
Ontologies - Pathways
QuickGOQ16695
Ontology : AmiGOnucleosome  nuclear nucleosome  DNA binding  protein binding  nucleus  nucleoplasm  double-strand break repair via nonhomologous end joining  nucleosome assembly  nucleosome assembly  telomere capping  negative regulation of protein oligomerization  histone binding  protein heterodimerization activity  protein heterotetramerization  extracellular exosome  
Ontology : EGO-EBInucleosome  nuclear nucleosome  DNA binding  protein binding  nucleus  nucleoplasm  double-strand break repair via nonhomologous end joining  nucleosome assembly  nucleosome assembly  telomere capping  negative regulation of protein oligomerization  histone binding  protein heterodimerization activity  protein heterotetramerization  extracellular exosome  
Pathways : KEGGAlcoholism    Transcriptional misregulation in cancer    Systemic lupus erythematosus   
NDEx NetworkHIST3H3
Atlas of Cancer Signalling NetworkHIST3H3
Wikipedia pathwaysHIST3H3
Orthology - Evolution
OrthoDB8290
GeneTree (enSembl)ENSG00000168148
Phylogenetic Trees/Animal Genes : TreeFamHIST3H3
HOVERGENQ16695
HOGENOMQ16695
Homologs : HomoloGeneHIST3H3
Homology/Alignments : Family Browser (UCSC)HIST3H3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIST3H3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIST3H3
dbVarHIST3H3
ClinVarHIST3H3
1000_GenomesHIST3H3 
Exome Variant ServerHIST3H3
ExAC (Exome Aggregation Consortium)HIST3H3 (select the gene name)
Genetic variants : HAPMAP8290
Genomic Variants (DGV)HIST3H3 [DGVbeta]
DECIPHERHIST3H3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIST3H3 
Mutations
ICGC Data PortalHIST3H3 
TCGA Data PortalHIST3H3 
Broad Tumor PortalHIST3H3
OASIS PortalHIST3H3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIST3H3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIST3H3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIST3H3
DgiDB (Drug Gene Interaction Database)HIST3H3
DoCM (Curated mutations)HIST3H3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIST3H3 (select a term)
intoGenHIST3H3
Cancer3DHIST3H3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602820   
Orphanet
MedgenHIST3H3
Genetic Testing Registry HIST3H3
NextProtQ16695 [Medical]
TSGene8290
GENETestsHIST3H3
Target ValidationHIST3H3
Huge Navigator HIST3H3 [HugePedia]
snp3D : Map Gene to Disease8290
BioCentury BCIQHIST3H3
ClinGenHIST3H3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8290
Chemical/Pharm GKB GenePA29153
Clinical trialHIST3H3
Miscellaneous
canSAR (ICR)HIST3H3 (select the gene name)
Probes
Litterature
PubMed247 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIST3H3
EVEXHIST3H3
GoPubMedHIST3H3
iHOPHIST3H3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:11:40 CEST 2017

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