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HIVEP2 (human immunodeficiency virus type I enhancer binding protein 2)

Identity

Alias_nameshuman immunodeficiency virus type I enhancer-binding protein 2
Alias_symbol (synonym)MBP-2
HIV-EP2
MIBP1
ZAS2
Schnurri-2
ZNF40B
Other aliasMRD43
SHN2
HGNC (Hugo) HIVEP2
LocusID (NCBI) 3097
Atlas_Id 64327
Location 6q24.2  [Link to chromosome band 6q24]
Location_base_pair Starts at 142751467 and ends at 142945201 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIVEP2   4921
Cards
Entrez_Gene (NCBI)HIVEP2  3097  human immunodeficiency virus type I enhancer binding protein 2
AliasesHIV-EP2; MBP-2; MIBP1; MRD43; 
SHN2; ZAS2; ZNF40B
GeneCards (Weizmann)HIVEP2
Ensembl hg19 (Hinxton)ENSG00000010818 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000010818 [Gene_View]  ENSG00000010818 [Sequence]  chr6:142751467-142945201 [Contig_View]  HIVEP2 [Vega]
ICGC DataPortalENSG00000010818
TCGA cBioPortalHIVEP2
AceView (NCBI)HIVEP2
Genatlas (Paris)HIVEP2
WikiGenes3097
SOURCE (Princeton)HIVEP2
Genetics Home Reference (NIH)HIVEP2
Genomic and cartography
GoldenPath hg38 (UCSC)HIVEP2  -     chr6:142751467-142945201 -  6q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HIVEP2  -     6q24.2   [Description]    (hg19-Feb_2009)
EnsemblHIVEP2 - 6q24.2 [CytoView hg19]  HIVEP2 - 6q24.2 [CytoView hg38]
Mapping of homologs : NCBIHIVEP2 [Mapview hg19]  HIVEP2 [Mapview hg38]
OMIM143054   616977   
Gene and transcription
Genbank (Entrez)AA041301 AA465317 AK226163 AK296531 AW197846
RefSeq transcript (Entrez)NM_006734
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HIVEP2
Cluster EST : UnigeneHs.510172 [ NCBI ]
CGAP (NCI)Hs.510172
Alternative Splicing GalleryENSG00000010818
Gene ExpressionHIVEP2 [ NCBI-GEO ]   HIVEP2 [ EBI - ARRAY_EXPRESS ]   HIVEP2 [ SEEK ]   HIVEP2 [ MEM ]
Gene Expression Viewer (FireBrowse)HIVEP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3097
GTEX Portal (Tissue expression)HIVEP2
Human Protein AtlasENSG00000010818-HIVEP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31629   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31629  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31629
Splice isoforms : SwissVarP31629
PhosPhoSitePlusP31629
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)HIVEP2
DMDM Disease mutations3097
Blocks (Seattle)HIVEP2
SuperfamilyP31629
Human Protein Atlas [tissue]ENSG00000010818-HIVEP2 [tissue]
Peptide AtlasP31629
HPRD00881
IPIIPI00144243   
Protein Interaction databases
DIP (DOE-UCLA)P31629
IntAct (EBI)P31629
FunCoupENSG00000010818
BioGRIDHIVEP2
STRING (EMBL)HIVEP2
ZODIACHIVEP2
Ontologies - Pathways
QuickGOP31629
Ontology : AmiGO###############################################################################################################################################################################################################################################################                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                      
NDEx NetworkHIVEP2
Atlas of Cancer Signalling NetworkHIVEP2
Wikipedia pathwaysHIVEP2
Orthology - Evolution
OrthoDB3097
GeneTree (enSembl)ENSG00000010818
Phylogenetic Trees/Animal Genes : TreeFamHIVEP2
HOVERGENP31629
HOGENOMP31629
Homologs : HomoloGeneHIVEP2
Homology/Alignments : Family Browser (UCSC)HIVEP2
Gene fusions - Rearrangements
Fusion : QuiverHIVEP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIVEP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIVEP2
dbVarHIVEP2
ClinVarHIVEP2
1000_GenomesHIVEP2 
Exome Variant ServerHIVEP2
ExAC (Exome Aggregation Consortium)ENSG00000010818
GNOMAD BrowserENSG00000010818
Varsome BrowserHIVEP2
Genetic variants : HAPMAP3097
Genomic Variants (DGV)HIVEP2 [DGVbeta]
DECIPHERHIVEP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHIVEP2 
Mutations
ICGC Data PortalHIVEP2 
TCGA Data PortalHIVEP2 
Broad Tumor PortalHIVEP2
OASIS PortalHIVEP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIVEP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIVEP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIVEP2
DgiDB (Drug Gene Interaction Database)HIVEP2
DoCM (Curated mutations)HIVEP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIVEP2 (select a term)
intoGenHIVEP2
Cancer3DHIVEP2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM143054    616977   
Orphanet
DisGeNETHIVEP2
MedgenHIVEP2
Genetic Testing Registry HIVEP2
NextProtP31629 [Medical]
TSGene3097
GENETestsHIVEP2
Target ValidationHIVEP2
Huge Navigator HIVEP2 [HugePedia]
snp3D : Map Gene to Disease3097
BioCentury BCIQHIVEP2
ClinGenHIVEP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3097
Chemical/Pharm GKB GenePA29298
Clinical trialHIVEP2
Miscellaneous
canSAR (ICR)HIVEP2 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIVEP2
EVEXHIVEP2
GoPubMedHIVEP2
iHOPHIVEP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:49:01 CEST 2018

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