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HIVEP3 (human immunodeficiency virus type I enhancer binding protein 3)

Identity

Alias_nameshuman immunodeficiency virus type I enhancer-binding protein 3
Alias_symbol (synonym)KRC
KBP1
KBP-1
SHN3
FLJ16752
KIAA1555
ZAS3
Schnurri-3
ZNF40C
Other alias
HGNC (Hugo) HIVEP3
LocusID (NCBI) 59269
Atlas_Id 52129
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 41972036 and ends at 42384378 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CCBE1 (18q21.32) / HIVEP3 (1p34.2)HIVEP3 (1p34.2) / APOC1 (19q13.32)HIVEP3 (1p34.2) / ASCC3 (6q16.3)
HIVEP3 (1p34.2) / CREB3L4 (1q21.3)HIVEP3 (1p34.2) / DOT1L (19p13.3)HIVEP3 (1p34.2) / HIVEP3 (1p34.2)
HIVEP3 (1p34.2) / HNRNPUL1 (19q13.2)HIVEP3 (1p34.2) / LOC441242 ()HIVEP3 (1p34.2) / LOC646329 ()
HIVEP3 (1p34.2) / SLC3A1 (2p21)HIVEP3 (1p34.2) / ZMYND12 (1p34.2)ICA1L (2q33.2) / HIVEP3 (1p34.2)
PTPRF (1p34.2) / HIVEP3 (1p34.2)HIVEP3 1p34.2 / ASCC3 6q16.3HIVEP3 1p34.2 / CREB3L4 1q21.3
HIVEP3 1p34.2 / DOT1L 19p13.3HIVEP3 1p34.2 / ZMYND12 1p34.2PTPRF 1p34.2 / HIVEP3 1p34.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HIVEP3   13561
Cards
Entrez_Gene (NCBI)HIVEP3  59269  human immunodeficiency virus type I enhancer binding protein 3
AliasesKBP-1; KBP1; KRC; SHN3; 
Schnurri-3; ZAS3; ZNF40C
GeneCards (Weizmann)HIVEP3
Ensembl hg19 (Hinxton)ENSG00000127124 [Gene_View]  chr1:41972036-42384378 [Contig_View]  HIVEP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000127124 [Gene_View]  chr1:41972036-42384378 [Contig_View]  HIVEP3 [Vega]
ICGC DataPortalENSG00000127124
TCGA cBioPortalHIVEP3
AceView (NCBI)HIVEP3
Genatlas (Paris)HIVEP3
WikiGenes59269
SOURCE (Princeton)HIVEP3
Genetics Home Reference (NIH)HIVEP3
Genomic and cartography
GoldenPath hg19 (UCSC)HIVEP3  -     chr1:41972036-42384378 -  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HIVEP3  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblHIVEP3 - 1p34.2 [CytoView hg19]  HIVEP3 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIHIVEP3 [Mapview hg19]  HIVEP3 [Mapview hg38]
OMIM606649   
Gene and transcription
Genbank (Entrez)AB046775 AF278765 AI082114 AI246631 AK122991
RefSeq transcript (Entrez)NM_001127714 NM_024503
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_030026 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)HIVEP3
Cluster EST : UnigeneHs.648369 [ NCBI ]
CGAP (NCI)Hs.648369
Alternative Splicing GalleryENSG00000127124
Gene ExpressionHIVEP3 [ NCBI-GEO ]   HIVEP3 [ EBI - ARRAY_EXPRESS ]   HIVEP3 [ SEEK ]   HIVEP3 [ MEM ]
Gene Expression Viewer (FireBrowse)HIVEP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)59269
GTEX Portal (Tissue expression)HIVEP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T1R4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T1R4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T1R4
Splice isoforms : SwissVarQ5T1R4
PhosPhoSitePlusQ5T1R4
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)HIVEP3
DMDM Disease mutations59269
Blocks (Seattle)HIVEP3
SuperfamilyQ5T1R4
Human Protein AtlasENSG00000127124
Peptide AtlasQ5T1R4
HPRD09442
IPIIPI00641105   IPI00328089   
Protein Interaction databases
DIP (DOE-UCLA)Q5T1R4
IntAct (EBI)Q5T1R4
FunCoupENSG00000127124
BioGRIDHIVEP3
STRING (EMBL)HIVEP3
ZODIACHIVEP3
Ontologies - Pathways
QuickGOQ5T1R4
Ontology : AmiGOtranscription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription from RNA polymerase II promoter  signal transduction  multicellular organism development  skeletal muscle cell differentiation  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBItranscription factor activity, sequence-specific DNA binding  nucleus  cytoplasm  transcription from RNA polymerase II promoter  signal transduction  multicellular organism development  skeletal muscle cell differentiation  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkHIVEP3
Atlas of Cancer Signalling NetworkHIVEP3
Wikipedia pathwaysHIVEP3
Orthology - Evolution
OrthoDB59269
GeneTree (enSembl)ENSG00000127124
Phylogenetic Trees/Animal Genes : TreeFamHIVEP3
HOVERGENQ5T1R4
HOGENOMQ5T1R4
Homologs : HomoloGeneHIVEP3
Homology/Alignments : Family Browser (UCSC)HIVEP3
Gene fusions - Rearrangements
Fusion : MitelmanHIVEP3/ASCC3 [1p34.2/6q16.3]  
Fusion : MitelmanHIVEP3/CREB3L4 [1p34.2/1q21.3]  [t(1;1)(p34;q21)]  
Fusion : MitelmanHIVEP3/DOT1L [1p34.2/19p13.3]  [t(1;19)(p34;p13)]  
Fusion : MitelmanHIVEP3/ZMYND12 [1p34.2/1p34.2]  [t(1;1)(p34;p34)]  
Fusion : MitelmanPTPRF/HIVEP3 [1p34.2/1p34.2]  [t(1;1)(p34;p34)]  
Fusion: TCGAHIVEP3 1p34.2 ASCC3 6q16.3 BRCA
Fusion: TCGAHIVEP3 1p34.2 CREB3L4 1q21.3 BRCA
Fusion: TCGAHIVEP3 1p34.2 DOT1L 19p13.3 SKCM
Fusion: TCGAHIVEP3 1p34.2 ZMYND12 1p34.2 BLCA
Fusion: TCGAPTPRF 1p34.2 HIVEP3 1p34.2 BRCA
Fusion Cancer (Beijing)HIVEP3 [1p34.2]  -  LOC441242 [-]  [FUSC001704]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHIVEP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HIVEP3
dbVarHIVEP3
ClinVarHIVEP3
1000_GenomesHIVEP3 
Exome Variant ServerHIVEP3
ExAC (Exome Aggregation Consortium)HIVEP3 (select the gene name)
Genetic variants : HAPMAP59269
Genomic Variants (DGV)HIVEP3 [DGVbeta]
DECIPHER (Syndromes)1:41972036-42384378  ENSG00000127124
CONAN: Copy Number AnalysisHIVEP3 
Mutations
ICGC Data PortalHIVEP3 
TCGA Data PortalHIVEP3 
Broad Tumor PortalHIVEP3
OASIS PortalHIVEP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHIVEP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHIVEP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HIVEP3
DgiDB (Drug Gene Interaction Database)HIVEP3
DoCM (Curated mutations)HIVEP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HIVEP3 (select a term)
intoGenHIVEP3
Cancer3DHIVEP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606649   
Orphanet
MedgenHIVEP3
Genetic Testing Registry HIVEP3
NextProtQ5T1R4 [Medical]
TSGene59269
GENETestsHIVEP3
Huge Navigator HIVEP3 [HugePedia]
snp3D : Map Gene to Disease59269
BioCentury BCIQHIVEP3
ClinGenHIVEP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD59269
Chemical/Pharm GKB GenePA29299
Clinical trialHIVEP3
Miscellaneous
canSAR (ICR)HIVEP3 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHIVEP3
EVEXHIVEP3
GoPubMedHIVEP3
iHOPHIVEP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:11 CET 2017

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