Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HJURP (Holliday junction recognition protein)

Identity

Other namesFAKTS
URLC9
hFLEG1
HGNC (Hugo) HJURP
LocusID (NCBI) 55355
Location 2q37.1
Location_base_pair Starts at 234745486 and ends at 234763212 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HJURP   25444
Entrez_Gene (NCBI)HJURP  55355  Holliday junction recognition protein
Cards
GeneCards (Weizmann)HJURP
Ensembl (Hinxton)ENSG00000123485 [Gene_View]  chr2:234745486-234763212 [Contig_View]  HJURP [Vega]
AceView (NCBI)HJURP
Genatlas (Paris)HJURP
SOURCE (Stanford)NM_018410
Genomic and cartography
GoldenPath (UCSC)HJURP  -  2q37.1   chr2:234745486-234763212 -  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblHJURP - 2q37.1 [CytoView]
Mapping of homologs : NCBIHJURP [Mapview]
OMIM612667   
Gene and transcription
Genbank (Entrez)AB101211 AB162218 AK074809 AK301643 AK303109
RefSeq transcript (SRS)NM_018410
RefSeq transcript (Entrez)NM_018410
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_005120 NW_001838868 NW_004078009
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005120 NW_001838868 NW_004078009
Consensus coding sequences : CCDS (NCBI)HJURP
Cluster EST : UnigeneHs.532968 [ SRS ] Hs.532968 [ NCBI ]
CGAP (NCI)Hs.532968
Alternative Splicing : Fast-db (Paris)GSHG0018427
Alternative Splicing GalleryENSG00000123485
Gene ExpressionHJURP [ NCBI-GEO ]   HJURP [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCD3 (SRS) Q8NCD3 (Uniprot)
NextProtQ8NCD3
With graphics : InterProQ8NCD3
Splice isoforms : SwissVarQ8NCD3(Swissvar)
Domains : Interpro (SRS)Centromere_Scm3_N    HJURP    HJURP_C   
Domains : Interpro (EBI)Centromere_Scm3_N    HJURP    HJURP_C   
Related proteins : CluSTrQ8NCD3
Domain families : Pfam (SRS)HJURP_C (PF12347)    HJURP_mid (PF12346)    Scm3 (PF10384)   
Domain families : Pfam (Sanger)HJURP_C (PF12347)    HJURP_mid (PF12346)    Scm3 (PF10384)   
Domain families : Pfam (NCBI)pfam12347    pfam12346    pfam10384   
DMDM55355
Blocks (Seattle)Q8NCD3
PDB (SRS)3R45   
PDB (PDBSum)3R45   
PDB (IMB)3R45   
PDB (RSDB)3R45   
Human Protein AtlasENSG00000123485
IPIIPI00301465   IPI00930368   IPI00894061   IPI00657982   IPI00893887   IPI00910145   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCD3
IntAct (EBI)Q8NCD3
FunCoupENSG00000123485
REACTOMEHJURP
Protein Interaction Database55355
BioGRIDHJURP
InParanoidQ8NCD3
Interologous Interaction database Q8NCD3
IntegromeDBHJURP
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HJURP
SNP (GeneSNP Utah)HJURP
SNP : HGBaseHJURP
Genetic variants : HAPMAPHJURP
Somatic Mutations in Cancer : COSMICHJURP 
CONAN: Copy Number AnalysisHJURP 
Mutations and Diseases : HGMDHJURP
OMIM612667   
GENETests612667   
Disease Genetic AssociationHJURP
Huge Navigator HJURP [HugePedia]  HJURP [HugeCancerGEM]
Genomic VariantsHJURP  HJURP [DGVbeta]
snp3D : Map Gene to Disease55355
General knowledge
Homologs : HomoloGeneHJURP
Homology/Alignments : Family Browser (UCSC)HJURP
Phylogenetic Trees/Animal Genes : TreeFamHJURP
Chemical/Protein Interactions : CTD55355
Chemical/Pharm GKB GenePA162390937
Clinical trialHJURP
Cancer Resource (Charite)ENSG00000123485
Ontology : AmiGOchromosome, centromeric region  condensed chromosome kinetochore  DNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  nucleosome assembly  cell cycle  chromosome segregation  CENP-A containing nucleosome assembly at centromere  CENP-A containing nucleosome assembly at centromere  histone binding  histone binding  regulation of protein complex assembly  regulation of DNA binding  
Ontology : EGO-EBIchromosome, centromeric region  condensed chromosome kinetochore  DNA binding  protein binding  nucleus  nucleoplasm  nucleolus  cytoplasm  nucleosome assembly  cell cycle  chromosome segregation  CENP-A containing nucleosome assembly at centromere  CENP-A containing nucleosome assembly at centromere  histone binding  histone binding  regulation of protein complex assembly  regulation of DNA binding  
Other databases
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
PubGeneHJURP
iHOPHJURP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:24:36 CEST 2013
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