Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HKR1 (-)

Identity

Alias_namesGLI-Kruppel family member HKR1
Alias_symbol (synonym)ZNF875
Other alias-
HGNC (Hugo) -
LocusID (NCBI) 284459
Atlas_Id 40828
Location -  [Link to chromosome band ]
Location_base_pair Starts at 37334624 and ends at 37364456 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EVL (14q32.2) / HKR1 (19q13.12)HKR1 (19q13.12) / ATP1A3 (19q13.2)HKR1 (19q13.12) / HKR1 (19q13.12)
HKR1 (19q13.12) / PPP2R3A (3q22.2)NUMB (14q24.2) / HKR1 (19q13.12)PTGDS (9q34.3) / HKR1 (19q13.12)
HKR1 19q13.12 / ATP1A3 19q13.2HKR1 19q13.12 / PPP2R3A 3q22.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0319q22q13ID105697 TT_t1919q13q13ID103343


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HKR1  284459  -
Aliases
GeneCards (Weizmann)HKR1
Ensembl hg19 (Hinxton)ENSG00000181666 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181666 [Gene_View]  ENSG00000181666 [Sequence]  chr19:37334624-37364456 [Contig_View]  HKR1 [Vega]
ICGC DataPortalENSG00000181666
TCGA cBioPortalHKR1
AceView (NCBI)HKR1
Genatlas (Paris)HKR1
WikiGenes284459
SOURCE (Princeton)HKR1
Genetics Home Reference (NIH)HKR1
Genomic and cartography
GoldenPath hg38 (UCSC)HKR1  -     chr19:37334624-37364456 +  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HKR1  -     -   [Description]    (hg19-Feb_2009)
GoldenPathHKR1 - - [CytoView hg19]  HKR1 - - [CytoView hg38]
ImmunoBaseENSG00000181666
Mapping of homologs : NCBIHKR1 [Mapview hg19]  HKR1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HKR1
Alternative Splicing GalleryENSG00000181666
Gene ExpressionHKR1 [ NCBI-GEO ]   HKR1 [ EBI - ARRAY_EXPRESS ]   HKR1 [ SEEK ]   HKR1 [ MEM ]
Gene Expression Viewer (FireBrowse)HKR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)284459
GTEX Portal (Tissue expression)HKR1
Human Protein AtlasENSG00000181666-HKR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HKR1
DMDM Disease mutations284459
Blocks (Seattle)HKR1
Human Protein Atlas [tissue]ENSG00000181666-HKR1 [tissue]
HPRD01314
IPIIPI00018891   IPI00477097   IPI00909574   IPI00645231   IPI00604493   IPI01010988   
Protein Interaction databases
FunCoupENSG00000181666
BioGRIDHKR1
STRING (EMBL)HKR1
ZODIACHKR1
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease284459
BioCentury BCIQHKR1
ClinGenHKR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284459
Clinical trialHKR1
Miscellaneous
canSAR (ICR)HKR1 (select the gene name)
DataMed IndexHKR1
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHKR1
EVEXHKR1
GoPubMedHKR1
iHOPHKR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 12 15:37:07 CEST 2019

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