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HLA-DPA1 (major histocompatibility complex, class II, DP alpha 1)

Identity

Alias (NCBI)DP(W3)
DP(W4)
DPA1
HLA-DP1A
HLA-DPA
HLA-DPB1
HLADP
HLASB
PLT1
HGNC (Hugo) HLA-DPA1
HGNC Previous nameHLA-DP1A
LocusID (NCBI) 3113
Atlas_Id 52523
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 33064569 and ends at 33073677 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-DPA1 (6p21.32) / HLA-DPA1 (6p21.32)HLA-DPA1 (6p21.32) / HLA-DPB1 (6p21.32)HLA-DPA1 (6p21.32) / NEAT1 (11q13.1)
HLA-DPA1 (6p21.32) / NKIRAS1 (3p24.2)HLA-DPA1 (6p21.32) / QKI (6q26)HLA-DPA1 (6p21.32) / SOX12 (20p13)
KMT2B (19q13.12) / HLA-DPA1 (6p21.32)LOC100129931 (4p16.1) / HLA-DPA1 (6p21.32)PSAP (10q22.1) / HLA-DPA1 (6p21.32)
RPLP2 (11p15.5) / HLA-DPA1 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)HLA-DPA1   4938
Cards
Entrez_Gene (NCBI)HLA-DPA1    major histocompatibility complex, class II, DP alpha 1
AliasesDP(W3); DP(W4); DPA1; HLA-DP1A; 
HLA-DPA; HLA-DPB1; HLADP; HLASB; PLT1
GeneCards (Weizmann)HLA-DPA1
Ensembl hg19 (Hinxton)ENSG00000231389 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000231389 [Gene_View]  ENSG00000231389 [Sequence]  chr6:33064569-33073677 [Contig_View]  HLA-DPA1 [Vega]
ICGC DataPortalENSG00000231389
TCGA cBioPortalHLA-DPA1
AceView (NCBI)HLA-DPA1
Genatlas (Paris)HLA-DPA1
SOURCE (Princeton)HLA-DPA1
Genetics Home Reference (NIH)HLA-DPA1
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-DPA1  -     chr6:33064569-33073677 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-DPA1  -     6p21.32   [Description]    (hg19-Feb_2009)
GoldenPathHLA-DPA1 - 6p21.32 [CytoView hg19]  HLA-DPA1 - 6p21.32 [CytoView hg38]
ImmunoBaseENSG00000231389
Genome Data Viewer NCBIHLA-DPA1 [Mapview hg19]  
OMIM142880   
Gene and transcription
Genbank (Entrez)AB209058 AK292709 BC009956 BI553587 BP338039
RefSeq transcript (Entrez)NM_001242524 NM_001242525 NM_033554
Consensus coding sequences : CCDS (NCBI)HLA-DPA1
Gene ExpressionHLA-DPA1 [ NCBI-GEO ]   HLA-DPA1 [ EBI - ARRAY_EXPRESS ]   HLA-DPA1 [ SEEK ]   HLA-DPA1 [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-DPA1 [ Firebrowse - Broad ]
GenevisibleExpression of HLA-DPA1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3113
GTEX Portal (Tissue expression)HLA-DPA1
Human Protein AtlasENSG00000231389-HLA-DPA1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HLA-DPA1
Human Protein Atlas [tissue]ENSG00000231389-HLA-DPA1 [tissue]
HPRD00835
Protein Interaction databases
BioGRIDHLA-DPA1
STRING (EMBL)HLA-DPA1
ZODIACHLA-DPA1
Ontologies - Pathways
Litterature
PubMed158 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHLA-DPA1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:29 CEST 2021

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