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HLA-DQA2 (major histocompatibility complex, class II, DQ alpha 2)

Identity

Alias_namesHLA-DXA
Other aliasDX-ALPHA
HLADQA2
HGNC (Hugo) HLA-DQA2
LocusID (NCBI) 3118
Atlas_Id 64331
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32741386 and ends at 32746887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-DQA2 (6p21.32) / HLA-DQA1 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HLA-DQA2   4943
Cards
Entrez_Gene (NCBI)HLA-DQA2  3118  major histocompatibility complex, class II, DQ alpha 2
AliasesDX-ALPHA; HLA-DXA; HLADQA2
GeneCards (Weizmann)HLA-DQA2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:32741386-32746887 [Contig_View]  HLA-DQA2 [Vega]
TCGA cBioPortalHLA-DQA2
AceView (NCBI)HLA-DQA2
Genatlas (Paris)HLA-DQA2
WikiGenes3118
SOURCE (Princeton)HLA-DQA2
Genetics Home Reference (NIH)HLA-DQA2
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-DQA2  -     chr6:32741386-32746887 +  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-DQA2  -     6p21.32   [Description]    (hg19-Feb_2009)
EnsemblHLA-DQA2 - 6p21.32 [CytoView hg19]  HLA-DQA2 - 6p21.32 [CytoView hg38]
Mapping of homologs : NCBIHLA-DQA2 [Mapview hg19]  HLA-DQA2 [Mapview hg38]
OMIM613503   
Gene and transcription
Genbank (Entrez)M95727 M95728
RefSeq transcript (Entrez)NM_020056
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HLA-DQA2
Cluster EST : UnigeneHs.591798 [ NCBI ]
CGAP (NCI)Hs.591798
Gene ExpressionHLA-DQA2 [ NCBI-GEO ]   HLA-DQA2 [ EBI - ARRAY_EXPRESS ]   HLA-DQA2 [ SEEK ]   HLA-DQA2 [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-DQA2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3118
GTEX Portal (Tissue expression)HLA-DQA2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01906   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01906  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01906
Splice isoforms : SwissVarP01906
PhosPhoSitePlusP01906
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)C1-set_C    Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    MHC_I/II-like_Ag-recog    MHC_II_a/b_N    MHC_II_a_N   
Domain families : Pfam (Sanger)C1-set (PF07654)    C1-set_C (PF16196)    MHC_II_alpha (PF00993)   
Domain families : Pfam (NCBI)pfam07654    pfam16196    pfam00993   
Domain families : Smart (EMBL)IGc1 (SM00407)  MHC_II_alpha (SM00920)  
Conserved Domain (NCBI)HLA-DQA2
DMDM Disease mutations3118
Blocks (Seattle)HLA-DQA2
SuperfamilyP01906
Peptide AtlasP01906
HPRD09982
IPIIPI00005172   IPI01021280   IPI00892765   
Protein Interaction databases
DIP (DOE-UCLA)P01906
IntAct (EBI)P01906
BioGRIDHLA-DQA2
STRING (EMBL)HLA-DQA2
ZODIACHLA-DQA2
Ontologies - Pathways
QuickGOP01906
Ontology : AmiGO###############################################################################################################################################################################################################################################################                                      
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                                      
NDEx NetworkHLA-DQA2
Atlas of Cancer Signalling NetworkHLA-DQA2
Wikipedia pathwaysHLA-DQA2
Orthology - Evolution
OrthoDB3118
Phylogenetic Trees/Animal Genes : TreeFamHLA-DQA2
HOVERGENP01906
HOGENOMP01906
Homologs : HomoloGeneHLA-DQA2
Homology/Alignments : Family Browser (UCSC)HLA-DQA2
Gene fusions - Rearrangements
Fusion : QuiverHLA-DQA2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHLA-DQA2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HLA-DQA2
dbVarHLA-DQA2
ClinVarHLA-DQA2
1000_GenomesHLA-DQA2 
Exome Variant ServerHLA-DQA2
Varsome BrowserHLA-DQA2
Genetic variants : HAPMAP3118
Genomic Variants (DGV)HLA-DQA2 [DGVbeta]
DECIPHERHLA-DQA2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHLA-DQA2 
Mutations
ICGC Data PortalHLA-DQA2 
TCGA Data PortalHLA-DQA2 
Broad Tumor PortalHLA-DQA2
OASIS PortalHLA-DQA2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHLA-DQA2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHLA-DQA2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HLA-DQA2
DgiDB (Drug Gene Interaction Database)HLA-DQA2
DoCM (Curated mutations)HLA-DQA2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HLA-DQA2 (select a term)
intoGenHLA-DQA2
Cancer3DHLA-DQA2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613503   
Orphanet
DisGeNETHLA-DQA2
MedgenHLA-DQA2
Genetic Testing Registry HLA-DQA2
NextProtP01906 [Medical]
TSGene3118
GENETestsHLA-DQA2
Target ValidationHLA-DQA2
Huge Navigator HLA-DQA2 [HugePedia]
snp3D : Map Gene to Disease3118
BioCentury BCIQHLA-DQA2
ClinGenHLA-DQA2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3118
Chemical/Pharm GKB GenePA35067
Clinical trialHLA-DQA2
Miscellaneous
canSAR (ICR)HLA-DQA2 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHLA-DQA2
EVEXHLA-DQA2
GoPubMedHLA-DQA2
iHOPHLA-DQA2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:49:02 CEST 2018

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