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HLA-DRB1 (major histocompatibility complex, class II, DR beta 1)

Identity

Alias (NCBI)DRB1
HLA-DR1B
HLA-DRB
SS1
HGNC (Hugo) HLA-DRB1
HGNC Previous nameHLA-DR1B
LocusID (NCBI) 3123
Atlas_Id 43946
Location 6p21.32  [Link to chromosome band 6p21]
Location_base_pair Starts at 32578770 and ends at 32589836 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABL2 (1q25.2) / HLA-DRB1 (6p21.32)E2F6 (2p25.1) / HLA-DRB1 (6p21.32)FGF5 (4q21.21) / HLA-DRB1 (6p21.32)
HLA-DRB1 (6p21.32) / ARIH2 (3p21.31)HLA-DRB1 (6p21.32) / C3 (19p13.3)HLA-DRB1 (6p21.32) / KCNAB1 (3q25.31)
HLA-DRB1 (6p21.32) / RAB9B (Xq22.2)HLA-DRB1 (6p21.32) / TPRN (9q34.3)IRX6 (16q12.2) / HLA-DRB1 (6p21.32)
PPP1R12B (1q32.1) / HLA-DRB1 (6p21.32)VIPR1 (3p22.1) / HLA-DRB1 (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)HLA-DRB1   4948
Cards
Entrez_Gene (NCBI)HLA-DRB1  3123  major histocompatibility complex, class II, DR beta 1
AliasesDRB1; HLA-DR1B; HLA-DRB; SS1
GeneCards (Weizmann)HLA-DRB1
Ensembl hg19 (Hinxton)ENSG00000196126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196126 [Gene_View]  ENSG00000196126 [Sequence]  chr6:32578770-32589836 [Contig_View]  HLA-DRB1 [Vega]
ICGC DataPortalENSG00000196126
TCGA cBioPortalHLA-DRB1
AceView (NCBI)HLA-DRB1
Genatlas (Paris)HLA-DRB1
WikiGenes3123
SOURCE (Princeton)HLA-DRB1
Genetics Home Reference (NIH)HLA-DRB1
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-DRB1  -     chr6:32578770-32589836 -  6p21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-DRB1  -     6p21.32   [Description]    (hg19-Feb_2009)
GoldenPathHLA-DRB1 - 6p21.32 [CytoView hg19]  HLA-DRB1 - 6p21.32 [CytoView hg38]
ImmunoBaseENSG00000196126
genome Data Viewer NCBIHLA-DRB1 [Mapview hg19]  
OMIM126200   142857   181000   
Gene and transcription
Genbank (Entrez)AF010142 AF017440 AF017441 AF291675 AF436097
RefSeq transcript (Entrez)NM_001243965 NM_001359193 NM_001359194 NM_002124
RefSeq genomic (Entrez)NC_000006 NG_029921 NT_113891 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HLA-DRB1
Alternative Splicing GalleryENSG00000196126
Gene ExpressionHLA-DRB1 [ NCBI-GEO ]   HLA-DRB1 [ EBI - ARRAY_EXPRESS ]   HLA-DRB1 [ SEEK ]   HLA-DRB1 [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-DRB1 [ Firebrowse - Broad ]
GenevisibleExpression of HLA-DRB1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3123
GTEX Portal (Tissue expression)HLA-DRB1
Human Protein AtlasENSG00000196126-HLA-DRB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HLA-DRB1
DMDM Disease mutations3123
Blocks (Seattle)HLA-DRB1
Human Protein Atlas [tissue]ENSG00000196126-HLA-DRB1 [tissue]
HPRD08349
IPIIPI00465279   IPI00639888   
Protein Interaction databases
FunCoupENSG00000196126
BioGRIDHLA-DRB1
STRING (EMBL)HLA-DRB1
ZODIACHLA-DRB1
Ontologies - Pathways
Huge Navigator HLA-DRB1 [HugePedia]
snp3D : Map Gene to Disease3123
BioCentury BCIQHLA-DRB1
ClinGenHLA-DRB1
Clinical trials, drugs, therapy
Protein Interactions : CTD3123
Pharm GKB GenePA35072
Clinical trialHLA-DRB1
Miscellaneous
canSAR (ICR)HLA-DRB1 (select the gene name)
HarmonizomeHLA-DRB1
DataMed IndexHLA-DRB1
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHLA-DRB1
EVEXHLA-DRB1
GoPubMedHLA-DRB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:14:25 CEST 2020

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