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HLA-H (major histocompatibility complex, class I, H (pseudogene))

Identity

Other aliasHLAHP
HGNC (Hugo) HLA-H
LocusID (NCBI) 3136
Atlas_Id 64334
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 29887573 and ends at 29891079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-A (6p22.1) / HLA-H (6p22.1)HLA-H (6p22.1) / EPAS1 (2p21)HLA-H (6p22.1) / HLA-B (6p21.33)
HLA-H (6p22.1) / HLA-C (6p21.33)HLA-H (6p22.1) / TTC29 (4q31.22)HLA-H (6p22.1) / ZMYND11 (10p15.3)
LOC100507412 (-) / HLA-H (6p22.1)MICB (6p21.33) / HLA-H (6p22.1)YIPF2 (19p13.2) / HLA-H (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HLA-H   4965
Cards
Entrez_Gene (NCBI)HLA-H  3136  major histocompatibility complex, class I, H (pseudogene)
AliasesHLAHP
GeneCards (Weizmann)HLA-H
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:29887573-29891079 [Contig_View]  HLA-H [Vega]
TCGA cBioPortalHLA-H
AceView (NCBI)HLA-H
Genatlas (Paris)HLA-H
WikiGenes3136
SOURCE (Princeton)HLA-H
Genetics Home Reference (NIH)HLA-H
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-H  -     chr6:29887573-29891079 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-H  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHLA-H - 6p22.1 [CytoView hg19]  HLA-H - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHLA-H [Mapview hg19]  HLA-H [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090500 AK299998 AK300878 AK308374
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HLA-H
Cluster EST : UnigeneHs.728808 [ NCBI ]
CGAP (NCI)Hs.728808
Gene ExpressionHLA-H [ NCBI-GEO ]   HLA-H [ EBI - ARRAY_EXPRESS ]   HLA-H [ SEEK ]   HLA-H [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-H [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3136
GTEX Portal (Tissue expression)HLA-H
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01893   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01893  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01893
Splice isoforms : SwissVarP01893
PhosPhoSitePlusP01893
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)    IG_MHC (PS00290)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_fold    Ig/MHC_CS    Ig_C1-set    MHC_I-like_Ag-recog    MHC_I/II-like_Ag-recog    MHC_I_a_a1/a2    MHC_I_a_C   
Domain families : Pfam (Sanger)C1-set (PF07654)    MHC_I (PF00129)    MHC_I_C (PF06623)   
Domain families : Pfam (NCBI)pfam07654    pfam00129    pfam06623   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)HLA-H
DMDM Disease mutations3136
Blocks (Seattle)HLA-H
SuperfamilyP01893
Peptide AtlasP01893
IPIIPI00004672   
Protein Interaction databases
DIP (DOE-UCLA)P01893
IntAct (EBI)P01893
BioGRIDHLA-H
STRING (EMBL)HLA-H
ZODIACHLA-H
Ontologies - Pathways
QuickGOP01893
Ontology : AmiGO###############################################################################################################################################################################################################################################################  
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################  
NDEx NetworkHLA-H
Atlas of Cancer Signalling NetworkHLA-H
Wikipedia pathwaysHLA-H
Orthology - Evolution
OrthoDB3136
Phylogenetic Trees/Animal Genes : TreeFamHLA-H
HOVERGENP01893
HOGENOMP01893
Homologs : HomoloGeneHLA-H
Homology/Alignments : Family Browser (UCSC)HLA-H
Gene fusions - Rearrangements
Fusion : QuiverHLA-H
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHLA-H [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HLA-H
dbVarHLA-H
ClinVarHLA-H
1000_GenomesHLA-H 
Exome Variant ServerHLA-H
Varsome BrowserHLA-H
Genetic variants : HAPMAP3136
Genomic Variants (DGV)HLA-H [DGVbeta]
DECIPHERHLA-H [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHLA-H 
Mutations
ICGC Data PortalHLA-H 
TCGA Data PortalHLA-H 
Broad Tumor PortalHLA-H
OASIS PortalHLA-H [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHLA-H
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HLA-H
DgiDB (Drug Gene Interaction Database)HLA-H
DoCM (Curated mutations)HLA-H (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HLA-H (select a term)
intoGenHLA-H
Cancer3DHLA-H(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHLA-H
MedgenHLA-H
Genetic Testing Registry HLA-H
NextProtP01893 [Medical]
TSGene3136
GENETestsHLA-H
Target ValidationHLA-H
Huge Navigator HLA-H [HugePedia]
snp3D : Map Gene to Disease3136
BioCentury BCIQHLA-H
ClinGenHLA-H
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3136
Chemical/Pharm GKB GenePA35084
Clinical trialHLA-H
Miscellaneous
canSAR (ICR)HLA-H (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHLA-H
EVEXHLA-H
GoPubMedHLA-H
iHOPHLA-H
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:49:03 CEST 2018

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