Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HLA-J (major histocompatibility complex, class I, J (pseudogene))

Identity

Alias_namesHLA-CDA12
D6S203
Alias_symbol (synonym)CDA12
HLA-59
Other alias
HGNC (Hugo) HLA-J
LocusID (NCBI) 3137
Atlas_Id 64335
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30005971 and ends at 30009956 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-J (6p22.1) / HLA-B (6p21.33)HLA-J (6p22.1) / HLA-C (6p21.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HLA-J   4967
Cards
Entrez_Gene (NCBI)HLA-J  3137  major histocompatibility complex, class I, J (pseudogene)
AliasesCDA12; D6S203; HLA-59; HLA-CDA12
GeneCards (Weizmann)HLA-J
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:30005971-30009956 [Contig_View]  HLA-J [Vega]
TCGA cBioPortalHLA-J
AceView (NCBI)HLA-J
Genatlas (Paris)HLA-J
WikiGenes3137
SOURCE (Princeton)HLA-J
Genetics Home Reference (NIH)HLA-J
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-J  -     chr6:30005971-30009956 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-J  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHLA-J - 6p22.1 [CytoView hg19]  HLA-J - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHLA-J [Mapview hg19]  HLA-J [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC020891 BC062324 BC089454 DA965044
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HLA-J
Cluster EST : UnigeneHs.720762 [ NCBI ]
CGAP (NCI)Hs.720762
Gene ExpressionHLA-J [ NCBI-GEO ]   HLA-J [ EBI - ARRAY_EXPRESS ]   HLA-J [ SEEK ]   HLA-J [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)3137
GTEX Portal (Tissue expression)HLA-J
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HLA-J
DMDM Disease mutations3137
Blocks (Seattle)HLA-J
IPIIPI00941535   
Protein Interaction databases
BioGRIDHLA-J
STRING (EMBL)HLA-J
ZODIACHLA-J
Ontologies - Pathways
Huge Navigator HLA-J [HugePedia]
snp3D : Map Gene to Disease3137
BioCentury BCIQHLA-J
ClinGenHLA-J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3137
Chemical/Pharm GKB GenePA35085
Clinical trialHLA-J
Miscellaneous
canSAR (ICR)HLA-J (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHLA-J
EVEXHLA-J
GoPubMedHLA-J
iHOPHLA-J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:49:03 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.