Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HLA-L (major histocompatibility complex, class I, L (pseudogene))

Identity

Alias_namesHLA92
HLAL
Alias_symbol (synonym)HLA-92
Other alias
HGNC (Hugo) HLA-L
LocusID (NCBI) 3139
Atlas_Id 64336
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 30259562 and ends at 30266951 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HLA-L (6p22.1) / HLA-B (6p21.33)HLA-L (6p22.1) / HLA-C (6p21.33)HLA-L (6p22.1) / HLA-F (6p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HLA-L   4970
Cards
Entrez_Gene (NCBI)HLA-L  3139  major histocompatibility complex, class I, L (pseudogene)
AliasesHLA-92; HLA92; HLAL
GeneCards (Weizmann)HLA-L
Ensembl hg19 (Hinxton)ENSG00000243753 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000243753 [Gene_View]  ENSG00000243753 [Sequence]  chr6:30259562-30266951 [Contig_View]  HLA-L [Vega]
ICGC DataPortalENSG00000243753
TCGA cBioPortalHLA-L
AceView (NCBI)HLA-L
Genatlas (Paris)HLA-L
WikiGenes3139
SOURCE (Princeton)HLA-L
Genetics Home Reference (NIH)HLA-L
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-L  -     chr6:30259562-30266951 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-L  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblHLA-L - 6p22.1 [CytoView hg19]  HLA-L - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIHLA-L [Mapview hg19]  HLA-L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127349 BC139904 BC141846 DA108297
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_002771 NT_113891 NT_167245 NT_167246 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HLA-L
Cluster EST : UnigeneHs.656020 [ NCBI ]
CGAP (NCI)Hs.656020
Alternative Splicing GalleryENSG00000243753
Gene ExpressionHLA-L [ NCBI-GEO ]   HLA-L [ EBI - ARRAY_EXPRESS ]   HLA-L [ SEEK ]   HLA-L [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)3139
GTEX Portal (Tissue expression)HLA-L
Human Protein AtlasENSG00000243753-HLA-L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HLA-L
DMDM Disease mutations3139
Blocks (Seattle)HLA-L
Human Protein Atlas [tissue]ENSG00000243753-HLA-L [tissue]
IPIIPI00418883   
Protein Interaction databases
FunCoupENSG00000243753
BioGRIDHLA-L
STRING (EMBL)HLA-L
ZODIACHLA-L
Ontologies - Pathways
Huge Navigator HLA-L [HugePedia]
snp3D : Map Gene to Disease3139
BioCentury BCIQHLA-L
ClinGenHLA-L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3139
Chemical/Pharm GKB GenePA35087
Clinical trialHLA-L
Miscellaneous
canSAR (ICR)HLA-L (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHLA-L
EVEXHLA-L
GoPubMedHLA-L
iHOPHLA-L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:49:03 CEST 2018

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