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HLA-V (major histocompatibility complex, class I, V (pseudogene))

Identity

Alias_namesHLA-75
HLA-75 pseudogene
Alias_symbol (synonym)dJ377H14.4
Other alias
HGNC (Hugo) HLA-V
LocusID (NCBI) 352962
Atlas_Id 79213
Location 6_GL000256v2_alt  [Link to chromosome band 6]
Location_base_pair Starts at 1098374 and ends at 1103038 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)HLA-V   23482
Cards
Entrez_Gene (NCBI)HLA-V  352962  major histocompatibility complex, class I, V (pseudogene)
AliasesHLA-75; dJ377H14.4
GeneCards (Weizmann)HLA-V
Ensembl hg19 (Hinxton)ENSG00000181126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181126 [Gene_View]  chr6_GL000256v2_alt:1098374-1103038 [Contig_View]  HLA-V [Vega]
ICGC DataPortalENSG00000181126
TCGA cBioPortalHLA-V
AceView (NCBI)HLA-V
Genatlas (Paris)HLA-V
WikiGenes352962
SOURCE (Princeton)HLA-V
Genetics Home Reference (NIH)HLA-V
Genomic and cartography
GoldenPath hg38 (UCSC)HLA-V  -     chr6_GL000256v2_alt:1098374-1103038 +  6_GL000256v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HLA-V  -     6_GL000256v2_alt   [Description]    (hg19-Feb_2009)
EnsemblHLA-V - 6_GL000256v2_alt [CytoView hg19]  HLA-V - 6_GL000256v2_alt [CytoView hg38]
Mapping of homologs : NCBIHLA-V [Mapview hg19]  HLA-V [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128290 AK310256 BC051362 BC068238
RefSeq transcript (Entrez)NM_001207043
RefSeq genomic (Entrez)NC_000006 NC_018917 NG_002729 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)HLA-V
Cluster EST : UnigeneHs.722872 [ NCBI ]
CGAP (NCI)Hs.722872
Alternative Splicing GalleryENSG00000181126
Gene ExpressionHLA-V [ NCBI-GEO ]   HLA-V [ EBI - ARRAY_EXPRESS ]   HLA-V [ SEEK ]   HLA-V [ MEM ]
Gene Expression Viewer (FireBrowse)HLA-V [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)352962
GTEX Portal (Tissue expression)HLA-V
Human Protein AtlasENSG00000181126-HLA-V [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HLA-V
DMDM Disease mutations352962
Blocks (Seattle)HLA-V
Human Protein Atlas [tissue]ENSG00000181126-HLA-V [tissue]
Protein Interaction databases
FunCoupENSG00000181126
BioGRIDHLA-V
STRING (EMBL)HLA-V
ZODIACHLA-V
Ontologies - Pathways
Huge Navigator HLA-V [HugePedia]
snp3D : Map Gene to Disease352962
BioCentury BCIQHLA-V
ClinGenHLA-V
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD352962
Chemical/Pharm GKB GenePA134954046
Clinical trialHLA-V
Miscellaneous
canSAR (ICR)HLA-V (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHLA-V
EVEXHLA-V
GoPubMedHLA-V
iHOPHLA-V
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:14:09 CET 2017

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