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HM13-AS1 (HM13 antisense RNA 1)

Identity

Alias_namesHM13 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) HM13-AS1
LocusID (NCBI) 100874042
Atlas_Id 64340
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31567587 and ends at 31573263 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HM13-AS1   41940
Cards
Entrez_Gene (NCBI)HM13-AS1  100874042  HM13 antisense RNA 1
Aliases
GeneCards (Weizmann)HM13-AS1
Ensembl hg19 (Hinxton)ENSG00000230613 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000230613 [Gene_View]  chr20:31567587-31573263 [Contig_View]  HM13-AS1 [Vega]
ICGC DataPortalENSG00000230613
TCGA cBioPortalHM13-AS1
AceView (NCBI)HM13-AS1
Genatlas (Paris)HM13-AS1
WikiGenes100874042
SOURCE (Princeton)HM13-AS1
Genetics Home Reference (NIH)HM13-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HM13-AS1  -     chr20:31567587-31573263 -  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HM13-AS1  -     20q11.21   [Description]    (hg19-Feb_2009)
EnsemblHM13-AS1 - 20q11.21 [CytoView hg19]  HM13-AS1 - 20q11.21 [CytoView hg38]
Mapping of homologs : NCBIHM13-AS1 [Mapview hg19]  HM13-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ710081
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HM13-AS1
Cluster EST : UnigeneHs.373741 [ NCBI ]
CGAP (NCI)Hs.373741
Alternative Splicing GalleryENSG00000230613
Gene ExpressionHM13-AS1 [ NCBI-GEO ]   HM13-AS1 [ EBI - ARRAY_EXPRESS ]   HM13-AS1 [ SEEK ]   HM13-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HM13-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100874042
GTEX Portal (Tissue expression)HM13-AS1
Human Protein AtlasENSG00000230613-HM13-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HM13-AS1
DMDM Disease mutations100874042
Blocks (Seattle)HM13-AS1
Human Protein Atlas [tissue]ENSG00000230613-HM13-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000230613
BioGRIDHM13-AS1
STRING (EMBL)HM13-AS1
ZODIACHM13-AS1
Ontologies - Pathways
Huge Navigator HM13-AS1 [HugePedia]
snp3D : Map Gene to Disease100874042
BioCentury BCIQHM13-AS1
ClinGenHM13-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100874042
Clinical trialHM13-AS1
Miscellaneous
canSAR (ICR)HM13-AS1 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHM13-AS1
EVEXHM13-AS1
GoPubMedHM13-AS1
iHOPHM13-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:41:34 CET 2017

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