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HM13 (histocompatibility minor 13)

Identity

Alias (NCBI)H13
IMP1
IMPAS
IMPAS-1
MSTP086
PSENL3
PSL3
SPP
SPPL1
HGNC (Hugo) HM13
HGNC Alias symbH13
dJ324O17.1
SPP
PSL3
IMP1
IMPAS
PSENL3
SPPL1
HGNC Alias namesignal peptide peptidase beta
 presenilin-like protein 3
 intramembrane protease
 signal peptide peptidase like 1
LocusID (NCBI) 81502
Atlas_Id 54362
Location 20q11.21  [Link to chromosome band 20q11]
Location_base_pair Starts at 31514442 and ends at 31541732 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL2L1 (20q11.21)::HM13 (20q11.21)CBFA2T2 (20q11.21)::HM13 (20q11.21)CDAN1 (15q15.2)::HM13 (20q11.21)
HM13 (20q11.21)::ASXL1 (20q11.21)HM13 (20q11.21)::BCL2L1 (20q11.21)HM13 (20q11.21)::PNPLA2 (11p15.5)
HM13 (20q11.21)::TSPAN31 (12q14.1)MPND (19p13.3)::HM13 (20q11.21)RLF (1p34.2)::HM13 (20q11.21)
TM9SF4 (20q11.21)::HM13 (20q11.21)TMEM241 (18q11.2)::HM13 (20q11.21)TPX2 (20q11.21)::HM13 (20q11.21)
CBFA2T2 20q11.21::HM13 20q11.21TM9SF4 20q11.21::HM13 20q11.21TPX2 20q11.21::HM13 20q11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(12;20)(q14;q11) HM13::TSPAN31


External links

Nomenclature
HGNC (Hugo)HM13   16435
LRG (Locus Reference Genomic)LRG_1106
Cards
Entrez_Gene (NCBI)HM13    histocompatibility minor 13
AliasesH13; IMP1; IMPAS; IMPAS-1; 
MSTP086; PSENL3; PSL3; SPP; SPPL1
GeneCards (Weizmann)HM13
Ensembl hg19 (Hinxton)ENSG00000101294 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101294 [Gene_View]  ENSG00000101294 [Sequence]  chr20:31514442-31541732 [Contig_View]  HM13 [Vega]
ICGC DataPortalENSG00000101294
TCGA cBioPortalHM13
AceView (NCBI)HM13
Genatlas (Paris)HM13
SOURCE (Princeton)HM13
Genetics Home Reference (NIH)HM13
Genomic and cartography
GoldenPath hg38 (UCSC)HM13  -     chr20:31514442-31541732 +  20q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HM13  -     20q11.21   [Description]    (hg19-Feb_2009)
GoldenPathHM13 - 20q11.21 [CytoView hg19]  HM13 - 20q11.21 [CytoView hg38]
ImmunoBaseENSG00000101294
Genome Data Viewer NCBIHM13 [Mapview hg19]  
OMIM607106   
Gene and transcription
Genbank (Entrez)AF172086 AF483215 AF515663 AJ345029 AJ420895
RefSeq transcript (Entrez)NM_030789 NM_178580 NM_178581 NM_178582
Consensus coding sequences : CCDS (NCBI)HM13
Gene ExpressionHM13 [ NCBI-GEO ]   HM13 [ EBI - ARRAY_EXPRESS ]   HM13 [ SEEK ]   HM13 [ MEM ]
Gene Expression Viewer (FireBrowse)HM13 [ Firebrowse - Broad ]
GenevisibleExpression of HM13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81502
GTEX Portal (Tissue expression)HM13
Human Protein AtlasENSG00000101294-HM13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HM13
Human Protein Atlas [tissue]ENSG00000101294-HM13 [tissue]
HPRD06166
Protein Interaction databases
BioGRIDHM13
STRING (EMBL)HM13
ZODIACHM13
Ontologies - Pathways
Litterature
PubMed84 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHM13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:37:04 CET 2022

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