Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HMCES (5-hydroxymethylcytosine (hmC) binding, ES cell-specific)

Identity

Alias_namesC3orf37
chromosome 3 open reading frame 37
5-hydroxymethylcytosine (hmC) binding, ES cell-specific
Alias_symbol (synonym)DC12
SRAPD1
Other alias
HGNC (Hugo) HMCES
LocusID (NCBI) 56941
Atlas_Id 64342
Location 3q21.3  [Link to chromosome band 3q21]
Location_base_pair Starts at 129278974 and ends at 129305292 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HMCES (3q21.3) / DLGAP4 (20q11.23)HMCES (3q21.3) / MECOM (3q26.2)IFT122 (3q21.3) / HMCES (3q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMCES   24446
Cards
Entrez_Gene (NCBI)HMCES  56941  5-hydroxymethylcytosine (hmC) binding, ES cell-specific
AliasesC3orf37; DC12; SRAPD1
GeneCards (Weizmann)HMCES
Ensembl hg19 (Hinxton)ENSG00000183624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183624 [Gene_View]  chr3:129278974-129305292 [Contig_View]  HMCES [Vega]
ICGC DataPortalENSG00000183624
TCGA cBioPortalHMCES
AceView (NCBI)HMCES
Genatlas (Paris)HMCES
WikiGenes56941
SOURCE (Princeton)HMCES
Genetics Home Reference (NIH)HMCES
Genomic and cartography
GoldenPath hg38 (UCSC)HMCES  -     chr3:129278974-129305292 +  3q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMCES  -     3q21.3   [Description]    (hg19-Feb_2009)
EnsemblHMCES - 3q21.3 [CytoView hg19]  HMCES - 3q21.3 [CytoView hg38]
Mapping of homologs : NCBIHMCES [Mapview hg19]  HMCES [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF035296 AF201934 AK025883 AK225264 AK297501
RefSeq transcript (Entrez)NM_001006109 NM_020187
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMCES
Cluster EST : UnigeneHs.458320 [ NCBI ]
CGAP (NCI)Hs.458320
Alternative Splicing GalleryENSG00000183624
Gene ExpressionHMCES [ NCBI-GEO ]   HMCES [ EBI - ARRAY_EXPRESS ]   HMCES [ SEEK ]   HMCES [ MEM ]
Gene Expression Viewer (FireBrowse)HMCES [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56941
GTEX Portal (Tissue expression)HMCES
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FZ2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FZ2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FZ2
Splice isoforms : SwissVarQ96FZ2
Catalytic activity : Enzyme3.4.-.- [ Enzyme-Expasy ]   3.4.-.-3.4.-.- [ IntEnz-EBI ]   3.4.-.- [ BRENDA ]   3.4.-.- [ KEGG ]   
PhosPhoSitePlusQ96FZ2
Domains : Interpro (EBI)SRAP   
Domain families : Pfam (Sanger)SRAP (PF02586)   
Domain families : Pfam (NCBI)pfam02586   
Conserved Domain (NCBI)HMCES
DMDM Disease mutations56941
Blocks (Seattle)HMCES
PDB (SRS)5KO9   
PDB (PDBSum)5KO9   
PDB (IMB)5KO9   
PDB (RSDB)5KO9   
Structural Biology KnowledgeBase5KO9   
SCOP (Structural Classification of Proteins)5KO9   
CATH (Classification of proteins structures)5KO9   
SuperfamilyQ96FZ2
Human Protein AtlasENSG00000183624
Peptide AtlasQ96FZ2
HPRD13119
IPIIPI00024618   IPI00910667   IPI00965168   IPI00966786   IPI00965574   IPI00967330   
Protein Interaction databases
DIP (DOE-UCLA)Q96FZ2
IntAct (EBI)Q96FZ2
FunCoupENSG00000183624
BioGRIDHMCES
STRING (EMBL)HMCES
ZODIACHMCES
Ontologies - Pathways
QuickGOQ96FZ2
Ontology : AmiGODNA binding  proteolysis  peptidase activity  
Ontology : EGO-EBIDNA binding  proteolysis  peptidase activity  
NDEx NetworkHMCES
Atlas of Cancer Signalling NetworkHMCES
Wikipedia pathwaysHMCES
Orthology - Evolution
OrthoDB56941
GeneTree (enSembl)ENSG00000183624
Phylogenetic Trees/Animal Genes : TreeFamHMCES
HOVERGENQ96FZ2
HOGENOMQ96FZ2
Homologs : HomoloGeneHMCES
Homology/Alignments : Family Browser (UCSC)HMCES
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMCES [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMCES
dbVarHMCES
ClinVarHMCES
1000_GenomesHMCES 
Exome Variant ServerHMCES
ExAC (Exome Aggregation Consortium)HMCES (select the gene name)
Genetic variants : HAPMAP56941
Genomic Variants (DGV)HMCES [DGVbeta]
DECIPHERHMCES [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMCES 
Mutations
ICGC Data PortalHMCES 
TCGA Data PortalHMCES 
Broad Tumor PortalHMCES
OASIS PortalHMCES [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHMCES
BioMutasearch HMCES
DgiDB (Drug Gene Interaction Database)HMCES
DoCM (Curated mutations)HMCES (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMCES (select a term)
intoGenHMCES
Cancer3DHMCES(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHMCES
Genetic Testing Registry HMCES
NextProtQ96FZ2 [Medical]
TSGene56941
GENETestsHMCES
Target ValidationHMCES
Huge Navigator HMCES [HugePedia]
snp3D : Map Gene to Disease56941
BioCentury BCIQHMCES
ClinGenHMCES
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56941
Chemical/Pharm GKB GenePA142672398
Clinical trialHMCES
Miscellaneous
canSAR (ICR)HMCES (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMCES
EVEXHMCES
GoPubMedHMCES
iHOPHMCES
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:32 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.