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HMCN2 (hemicentin 2)

Identity

Alias_symbol (synonym)DKFZp434P0216
FLJ23816
Other alias-
HGNC (Hugo) HMCN2
LocusID (NCBI) 256158
Atlas_Id 64343
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 130265879 and ends at 130434123 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMCN2   21293
Cards
Entrez_Gene (NCBI)HMCN2  256158  hemicentin 2
Aliases
GeneCards (Weizmann)HMCN2
Ensembl hg19 (Hinxton)ENSG00000148357 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148357 [Gene_View]  chr9:130265879-130434123 [Contig_View]  HMCN2 [Vega]
ICGC DataPortalENSG00000148357
TCGA cBioPortalHMCN2
AceView (NCBI)HMCN2
Genatlas (Paris)HMCN2
WikiGenes256158
SOURCE (Princeton)HMCN2
Genetics Home Reference (NIH)HMCN2
Genomic and cartography
GoldenPath hg38 (UCSC)HMCN2  -     chr9:130265879-130434123 +  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMCN2  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblHMCN2 - 9q34.11 [CytoView hg19]  HMCN2 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIHMCN2 [Mapview hg19]  HMCN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074396 AK093583 AK128020 AK128680 AL834139
RefSeq transcript (Entrez)NM_001291815 NM_144655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMCN2
Cluster EST : UnigeneHs.512559 [ NCBI ]
CGAP (NCI)Hs.512559
Alternative Splicing GalleryENSG00000148357
Gene ExpressionHMCN2 [ NCBI-GEO ]   HMCN2 [ EBI - ARRAY_EXPRESS ]   HMCN2 [ SEEK ]   HMCN2 [ MEM ]
Gene Expression Viewer (FireBrowse)HMCN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256158
GTEX Portal (Tissue expression)HMCN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDA2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDA2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDA2
Splice isoforms : SwissVarQ8NDA2
PhosPhoSitePlusQ8NDA2
Domaine pattern : Prosite (Expaxy)ASX_HYDROXYL (PS00010)    EGF_2 (PS01186)    EGF_3 (PS50026)    EGF_CA (PS01187)    IG_LIKE (PS50835)    NIDOGEN_G2 (PS50993)   
Domains : Interpro (EBI)cEGF    EGF-like_Ca-bd_dom    EGF-like_CS    EGF-like_dom    EGF-type_Asp/Asn_hydroxyl_site    EGF_Ca-bd_CS    G2_nidogen/fibulin_G2F    GFP    GFP-like    Growth_fac_rcpt_    Hemicentin-1/2    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Ig_V-set    VWF_A   
Domain families : Pfam (Sanger)cEGF (PF12662)    EGF_CA (PF07645)    G2F (PF07474)    I-set (PF07679)   
Domain families : Pfam (NCBI)pfam12662    pfam07645    pfam07474    pfam07679   
Domain families : Smart (EMBL)EGF (SM00181)  EGF_CA (SM00179)  G2F (SM00682)  IG (SM00409)  IGc2 (SM00408)  IGv (SM00406)  
Conserved Domain (NCBI)HMCN2
DMDM Disease mutations256158
Blocks (Seattle)HMCN2
SuperfamilyQ8NDA2
Human Protein AtlasENSG00000148357
Peptide AtlasQ8NDA2
IPIIPI00936570   IPI00964287   IPI00335009   IPI00738364   IPI00915998   IPI00916459   IPI00917555   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDA2
IntAct (EBI)Q8NDA2
FunCoupENSG00000148357
BioGRIDHMCN2
STRING (EMBL)HMCN2
ZODIACHMCN2
Ontologies - Pathways
QuickGOQ8NDA2
Ontology : AmiGOcalcium ion binding  basement membrane  cell cortex  smooth muscle contraction  cell junction  positive regulation of cell migration  cleavage furrow  response to stimulus  
Ontology : EGO-EBIcalcium ion binding  basement membrane  cell cortex  smooth muscle contraction  cell junction  positive regulation of cell migration  cleavage furrow  response to stimulus  
NDEx NetworkHMCN2
Atlas of Cancer Signalling NetworkHMCN2
Wikipedia pathwaysHMCN2
Orthology - Evolution
OrthoDB256158
GeneTree (enSembl)ENSG00000148357
Phylogenetic Trees/Animal Genes : TreeFamHMCN2
HOVERGENQ8NDA2
HOGENOMQ8NDA2
Homologs : HomoloGeneHMCN2
Homology/Alignments : Family Browser (UCSC)HMCN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMCN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMCN2
dbVarHMCN2
ClinVarHMCN2
1000_GenomesHMCN2 
Exome Variant ServerHMCN2
ExAC (Exome Aggregation Consortium)HMCN2 (select the gene name)
Genetic variants : HAPMAP256158
Genomic Variants (DGV)HMCN2 [DGVbeta]
DECIPHERHMCN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMCN2 
Mutations
ICGC Data PortalHMCN2 
TCGA Data PortalHMCN2 
Broad Tumor PortalHMCN2
OASIS PortalHMCN2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHMCN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMCN2
DgiDB (Drug Gene Interaction Database)HMCN2
DoCM (Curated mutations)HMCN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMCN2 (select a term)
intoGenHMCN2
Cancer3DHMCN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHMCN2
Genetic Testing Registry HMCN2
NextProtQ8NDA2 [Medical]
TSGene256158
GENETestsHMCN2
Target ValidationHMCN2
Huge Navigator HMCN2 [HugePedia]
snp3D : Map Gene to Disease256158
BioCentury BCIQHMCN2
ClinGenHMCN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256158
Chemical/Pharm GKB GenePA142671680
Clinical trialHMCN2
Miscellaneous
canSAR (ICR)HMCN2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMCN2
EVEXHMCN2
GoPubMedHMCN2
iHOPHMCN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:32 CEST 2017

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