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HMG20A (high mobility group 20A)

Identity

Alias_nameshigh-mobility group 20A
Alias_symbol (synonym)HMGX1
FLJ10739
HMGXB1
Other alias
HGNC (Hugo) HMG20A
LocusID (NCBI) 10363
Atlas_Id 46777
Location 15q24.3  [Link to chromosome band 15q24]
Location_base_pair Starts at 77712993 and ends at 77777946 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ETFA (15q24.2) / HMG20A (15q24.3)HMG20A (15q24.3) / RBM39 (20q11.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMG20A   5001
Cards
Entrez_Gene (NCBI)HMG20A  10363  high mobility group 20A
AliasesHMGX1; HMGXB1
GeneCards (Weizmann)HMG20A
Ensembl hg19 (Hinxton)ENSG00000140382 [Gene_View]  chr15:77712993-77777946 [Contig_View]  HMG20A [Vega]
Ensembl hg38 (Hinxton)ENSG00000140382 [Gene_View]  chr15:77712993-77777946 [Contig_View]  HMG20A [Vega]
ICGC DataPortalENSG00000140382
TCGA cBioPortalHMG20A
AceView (NCBI)HMG20A
Genatlas (Paris)HMG20A
WikiGenes10363
SOURCE (Princeton)HMG20A
Genetics Home Reference (NIH)HMG20A
Genomic and cartography
GoldenPath hg19 (UCSC)HMG20A  -     chr15:77712993-77777946 +  15q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HMG20A  -     15q24.3   [Description]    (hg38-Dec_2013)
EnsemblHMG20A - 15q24.3 [CytoView hg19]  HMG20A - 15q24.3 [CytoView hg38]
Mapping of homologs : NCBIHMG20A [Mapview hg19]  HMG20A [Mapview hg38]
OMIM605534   
Gene and transcription
Genbank (Entrez)AA233289 AB073664 AF146222 AK001601 AK025664
RefSeq transcript (Entrez)NM_001304504 NM_001304505 NM_018200
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)HMG20A
Cluster EST : UnigeneHs.69594 [ NCBI ]
CGAP (NCI)Hs.69594
Alternative Splicing GalleryENSG00000140382
Gene ExpressionHMG20A [ NCBI-GEO ]   HMG20A [ EBI - ARRAY_EXPRESS ]   HMG20A [ SEEK ]   HMG20A [ MEM ]
Gene Expression Viewer (FireBrowse)HMG20A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10363
GTEX Portal (Tissue expression)HMG20A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP66   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP66  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP66
Splice isoforms : SwissVarQ9NP66
PhosPhoSitePlusQ9NP66
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom   
Domain families : Pfam (Sanger)HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)HMG20A
DMDM Disease mutations10363
Blocks (Seattle)HMG20A
SuperfamilyQ9NP66
Human Protein AtlasENSG00000140382
Peptide AtlasQ9NP66
HPRD16116
IPIIPI00018924   IPI00759508   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP66
IntAct (EBI)Q9NP66
FunCoupENSG00000140382
BioGRIDHMG20A
STRING (EMBL)HMG20A
ZODIACHMG20A
Ontologies - Pathways
QuickGOQ9NP66
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  chromatin modification  negative regulation of neuron differentiation  protein heterodimerization activity  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  chromatin organization  transcription, DNA-templated  regulation of transcription, DNA-templated  chromatin modification  negative regulation of neuron differentiation  protein heterodimerization activity  
NDEx NetworkHMG20A
Atlas of Cancer Signalling NetworkHMG20A
Wikipedia pathwaysHMG20A
Orthology - Evolution
OrthoDB10363
GeneTree (enSembl)ENSG00000140382
Phylogenetic Trees/Animal Genes : TreeFamHMG20A
HOVERGENQ9NP66
HOGENOMQ9NP66
Homologs : HomoloGeneHMG20A
Homology/Alignments : Family Browser (UCSC)HMG20A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMG20A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMG20A
dbVarHMG20A
ClinVarHMG20A
1000_GenomesHMG20A 
Exome Variant ServerHMG20A
ExAC (Exome Aggregation Consortium)HMG20A (select the gene name)
Genetic variants : HAPMAP10363
Genomic Variants (DGV)HMG20A [DGVbeta]
DECIPHER (Syndromes)15:77712993-77777946  ENSG00000140382
CONAN: Copy Number AnalysisHMG20A 
Mutations
ICGC Data PortalHMG20A 
TCGA Data PortalHMG20A 
Broad Tumor PortalHMG20A
OASIS PortalHMG20A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMG20A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMG20A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMG20A
DgiDB (Drug Gene Interaction Database)HMG20A
DoCM (Curated mutations)HMG20A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMG20A (select a term)
intoGenHMG20A
Cancer3DHMG20A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605534   
Orphanet
MedgenHMG20A
Genetic Testing Registry HMG20A
NextProtQ9NP66 [Medical]
TSGene10363
GENETestsHMG20A
Huge Navigator HMG20A [HugePedia]
snp3D : Map Gene to Disease10363
BioCentury BCIQHMG20A
ClinGenHMG20A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10363
Chemical/Pharm GKB GenePA29331
Clinical trialHMG20A
Miscellaneous
canSAR (ICR)HMG20A (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMG20A
EVEXHMG20A
GoPubMedHMG20A
iHOPHMG20A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:18 CET 2017

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