HMG20B (high-mobility group 20B)

Identity

Other names	BRAF25
	BRAF35
	FLJ26127
	HMGX2
	PP7706
	SMARCE1r
	SOXL
	pp8857
HGNC	HMG20B
Location	19p13.3
Location_base_pair	Starts at 3523943 and ends at 3530081 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	HMG20B   5002
Entrez_Gene	HMG20B  10362  high-mobility group 20B
	Cards
GeneCards	HMG20B
Ensembl	HMG20B [Search_View]   ENSG00000158806 [Gene_View]
Genatlas	HMG20B
GeneLynx	HMG20B
eGenome	HMG20B
euGene	10362
	Genomic and cartography
GoldenPath	HMG20B  -  19p13.3   chr19:3523943-3530081 +  19p13.3   [Description]    (hg18-March_2006)
Ensembl	HMG20B - 19p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	HMG20B
	Gene and transcription
Genbank	AF072165 [ ENTREZ ]
Genbank	AF072836 [ ENTREZ ]
Genbank	AF146223 [ ENTREZ ]
Genbank	AF288679 [ ENTREZ ]
Genbank	AF318366 [ ENTREZ ]
RefSeq	NM_006339 [ SRS ]    NM_006339 [ ENTREZ ]
RefSeq	AC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeq	AC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeq	NC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeq	NT_011255 [ SRS ]    NT_011255 [ ENTREZ ]
RefSeq	NW_001838476 [ SRS ]    NW_001838476 [ ENTREZ ]
RefSeq	NW_927173 [ SRS ]    NW_927173 [ ENTREZ ]
AceView	HMG20B AceView - NCBI
Unigene	Hs.406534 [ SRS ]    Hs.406534 [ NCBI ]     HS406534 [ spliceNest ]
Fast-db	2137 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q71RA9 [ SRS]    Q71RA9 [ EXPASY ]     Q71RA9 [ INTERPRO ]     Q71RA9 [ UNIPROT ]
Prosite	PS00178 AA_TRNA_LIGASE_I [ SRS ]    PS00178 AA_TRNA_LIGASE_I [ Expasy ]
Interpro	IPR001412 aa-tRNA-synth_I_CS [ SRS ]    IPR001412 aa-tRNA-synth_I_CS [ EBI ]
CluSTr	Q71RA9
Blocks	Q71RA9
HPRD	05703
	Protein Interaction databases
DIP	Q71RA9
IntAct	Q71RA9
	Polymorphism : SNP, mutations, diseases
OMIM	605535    [ map ]
GENECLINICS	605535
SNP	HMG20B [dbSNP-NCBI]
SNP	NM_006339 [SNP-NCI]
SNP	HMG20B [GeneSNPs - Utah]  HMG20B] [HGBASE - SRS]
HAPMAP	HMG20B [HAPMAP]
HGMD	HMG20B
	General knowledge
Family Browser	HMG20B [UCSC Family Browser]
SOURCE	NM_006339
SMD	Hs.406534
SAGE	Hs.406534
GO	nucleotide binding [Amigo]  nucleotide binding
GO	chromatin [Amigo]  chromatin
GO	transcription factor activity [Amigo]  transcription factor activity
GO	aminoacyl-tRNA ligase activity [Amigo]  aminoacyl-tRNA ligase activity
GO	ATP binding [Amigo]  ATP binding
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	tRNA aminoacylation for protein translation [Amigo]  tRNA aminoacylation for protein translation
GO	cell cycle [Amigo]  cell cycle
GO	chromatin modification [Amigo]  chromatin modification
PubGene	HMG20B
TreeFam	HMG20B
CTD	10362 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	HMG20B Related clones (RZPD - Berlin)
	PubMed
PubMed	17 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:44:55 2008