Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HMGB3P1 (high mobility group box 3 pseudogene 1)

Identity

Alias_namesHMG4L
HMGB3L1
high-mobility group (nonhistone chromosomal) protein 4-like
high-mobility group box 3-like 1
high-mobility group box 3 pseudogene 1
Alias_symbol (synonym)dJ18C9.3
Other alias
HGNC (Hugo) HMGB3P1
LocusID (NCBI) 128872
Atlas_Id 64345
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 34833575 and ends at 34834462 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMGB3P1   16240
Cards
Entrez_Gene (NCBI)HMGB3P1  128872  high mobility group box 3 pseudogene 1
AliasesHMG4L; HMGB3L1; dJ18C9.3
GeneCards (Weizmann)HMGB3P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr20:34833575-34834462 [Contig_View]  HMGB3P1 [Vega]
TCGA cBioPortalHMGB3P1
AceView (NCBI)HMGB3P1
Genatlas (Paris)HMGB3P1
WikiGenes128872
SOURCE (Princeton)HMGB3P1
Genetics Home Reference (NIH)HMGB3P1
Genomic and cartography
GoldenPath hg38 (UCSC)HMGB3P1  -     chr20:34833575-34834462 -  20q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGB3P1  -     20q11.22   [Description]    (hg19-Feb_2009)
EnsemblHMGB3P1 - 20q11.22 [CytoView hg19]  HMGB3P1 - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIHMGB3P1 [Mapview hg19]  HMGB3P1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC103849 BC103850 BC103851
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMGB3P1
Cluster EST : UnigeneHs.558624 [ NCBI ]
CGAP (NCI)Hs.558624
Gene ExpressionHMGB3P1 [ NCBI-GEO ]   HMGB3P1 [ EBI - ARRAY_EXPRESS ]   HMGB3P1 [ SEEK ]   HMGB3P1 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGB3P1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)128872
GTEX Portal (Tissue expression)HMGB3P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HMGB3P1
DMDM Disease mutations128872
Blocks (Seattle)HMGB3P1
Protein Interaction databases
BioGRIDHMGB3P1
STRING (EMBL)HMGB3P1
ZODIACHMGB3P1
Ontologies - Pathways
Huge Navigator HMGB3P1 [HugePedia]
snp3D : Map Gene to Disease128872
BioCentury BCIQHMGB3P1
ClinGenHMGB3P1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128872
Chemical/Pharm GKB GenePA29334
Clinical trialHMGB3P1
Miscellaneous
canSAR (ICR)HMGB3P1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGB3P1
EVEXHMGB3P1
GoPubMedHMGB3P1
iHOPHMGB3P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:15:49 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.