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HMGB4 (high mobility group box 4)

Identity

Alias_nameshigh-mobility group box 4
Alias_symbol (synonym)FLJ40388
Other aliasdJ1007G16.5
HGNC (Hugo) HMGB4
LocusID (NCBI) 127540
Atlas_Id 64346
Location 1p35.1  [Link to chromosome band 1p35]
Location_base_pair Starts at 33860475 and ends at 33864791 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMGB4   24954
Cards
Entrez_Gene (NCBI)HMGB4  127540  high mobility group box 4
AliasesdJ1007G16.5
GeneCards (Weizmann)HMGB4
Ensembl hg19 (Hinxton)ENSG00000176256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176256 [Gene_View]  chr1:33860475-33864791 [Contig_View]  HMGB4 [Vega]
ICGC DataPortalENSG00000176256
TCGA cBioPortalHMGB4
AceView (NCBI)HMGB4
Genatlas (Paris)HMGB4
WikiGenes127540
SOURCE (Princeton)HMGB4
Genetics Home Reference (NIH)HMGB4
Genomic and cartography
GoldenPath hg38 (UCSC)HMGB4  -     chr1:33860475-33864791 +  1p35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGB4  -     1p35.1   [Description]    (hg19-Feb_2009)
EnsemblHMGB4 - 1p35.1 [CytoView hg19]  HMGB4 - 1p35.1 [CytoView hg38]
Mapping of homologs : NCBIHMGB4 [Mapview hg19]  HMGB4 [Mapview hg38]
OMIM617285   
Gene and transcription
Genbank (Entrez)AK097707 AK130859 AK310465 AK311985 BC021180
RefSeq transcript (Entrez)NM_145205
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMGB4
Cluster EST : UnigeneHs.667683 [ NCBI ]
CGAP (NCI)Hs.667683
Alternative Splicing GalleryENSG00000176256
Gene ExpressionHMGB4 [ NCBI-GEO ]   HMGB4 [ EBI - ARRAY_EXPRESS ]   HMGB4 [ SEEK ]   HMGB4 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127540
GTEX Portal (Tissue expression)HMGB4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WW32   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WW32  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WW32
Splice isoforms : SwissVarQ8WW32
PhosPhoSitePlusQ8WW32
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom   
Domain families : Pfam (Sanger)HMG_box (PF00505)    HMG_box_2 (PF09011)   
Domain families : Pfam (NCBI)pfam00505    pfam09011   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)HMGB4
DMDM Disease mutations127540
Blocks (Seattle)HMGB4
SuperfamilyQ8WW32
Human Protein AtlasENSG00000176256
Peptide AtlasQ8WW32
HPRD14038
IPIIPI00815726   
Protein Interaction databases
DIP (DOE-UCLA)Q8WW32
IntAct (EBI)Q8WW32
FunCoupENSG00000176256
BioGRIDHMGB4
STRING (EMBL)HMGB4
ZODIACHMGB4
Ontologies - Pathways
QuickGOQ8WW32
Ontology : AmiGODNA binding  protein binding  nucleus  chromosome  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  chromosome  
NDEx NetworkHMGB4
Atlas of Cancer Signalling NetworkHMGB4
Wikipedia pathwaysHMGB4
Orthology - Evolution
OrthoDB127540
GeneTree (enSembl)ENSG00000176256
Phylogenetic Trees/Animal Genes : TreeFamHMGB4
HOVERGENQ8WW32
HOGENOMQ8WW32
Homologs : HomoloGeneHMGB4
Homology/Alignments : Family Browser (UCSC)HMGB4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGB4
dbVarHMGB4
ClinVarHMGB4
1000_GenomesHMGB4 
Exome Variant ServerHMGB4
ExAC (Exome Aggregation Consortium)HMGB4 (select the gene name)
Genetic variants : HAPMAP127540
Genomic Variants (DGV)HMGB4 [DGVbeta]
DECIPHERHMGB4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMGB4 
Mutations
ICGC Data PortalHMGB4 
TCGA Data PortalHMGB4 
Broad Tumor PortalHMGB4
OASIS PortalHMGB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMGB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMGB4
DgiDB (Drug Gene Interaction Database)HMGB4
DoCM (Curated mutations)HMGB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMGB4 (select a term)
intoGenHMGB4
Cancer3DHMGB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617285   
Orphanet
MedgenHMGB4
Genetic Testing Registry HMGB4
NextProtQ8WW32 [Medical]
TSGene127540
GENETestsHMGB4
Huge Navigator HMGB4 [HugePedia]
snp3D : Map Gene to Disease127540
BioCentury BCIQHMGB4
ClinGenHMGB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127540
Chemical/Pharm GKB GenePA142671677
Clinical trialHMGB4
Miscellaneous
canSAR (ICR)HMGB4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGB4
EVEXHMGB4
GoPubMedHMGB4
iHOPHMGB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:15:49 CEST 2017

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