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HMGN1 (high mobility group nucleosome binding domain 1)

Identity

Alias (NCBI)HMG14
HGNC (Hugo) HMGN1
HGNC Alias symbFLJ27265
FLJ31471
MGC104230
MGC117425
HGNC Alias namehigh-mobility group nucleosome binding 1
 nonhistone chromosomal protein HMG-14
HGNC Previous nameHMG14
HGNC Previous namehigh-mobility group (nonhistone chromosomal) protein 14
 high-mobility group nucleosome binding domain 1
LocusID (NCBI) 3150
Atlas_Id 46588
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39342315 and ends at 39349088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FN1 (2q35) / HMGN1 (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HMGN1   4984
Cards
Entrez_Gene (NCBI)HMGN1    high mobility group nucleosome binding domain 1
AliasesHMG14
GeneCards (Weizmann)HMGN1
Ensembl hg19 (Hinxton)ENSG00000205581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205581 [Gene_View]  ENSG00000205581 [Sequence]  chr21:39342315-39349088 [Contig_View]  HMGN1 [Vega]
ICGC DataPortalENSG00000205581
TCGA cBioPortalHMGN1
AceView (NCBI)HMGN1
Genatlas (Paris)HMGN1
SOURCE (Princeton)HMGN1
Genetics Home Reference (NIH)HMGN1
Genomic and cartography
GoldenPath hg38 (UCSC)HMGN1  -     chr21:39342315-39349088 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGN1  -     21q22.2   [Description]    (hg19-Feb_2009)
GoldenPathHMGN1 - 21q22.2 [CytoView hg19]  HMGN1 - 21q22.2 [CytoView hg38]
ImmunoBaseENSG00000205581
Genome Data Viewer NCBIHMGN1 [Mapview hg19]  
OMIM163920   
Gene and transcription
Genbank (Entrez)AB209245 AK056033 AK130775 AK315410 AL582106
RefSeq transcript (Entrez)NM_004965
Consensus coding sequences : CCDS (NCBI)HMGN1
Gene ExpressionHMGN1 [ NCBI-GEO ]   HMGN1 [ EBI - ARRAY_EXPRESS ]   HMGN1 [ SEEK ]   HMGN1 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN1 [ Firebrowse - Broad ]
GenevisibleExpression of HMGN1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3150
GTEX Portal (Tissue expression)HMGN1
Human Protein AtlasENSG00000205581-HMGN1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05114   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05114  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05114
PhosPhoSitePlusP05114
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam   
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
Conserved Domain (NCBI)HMGN1
SuperfamilyP05114
AlphaFold pdb e-kbP05114   
Human Protein Atlas [tissue]ENSG00000205581-HMGN1 [tissue]
HPRD01231
Protein Interaction databases
DIP (DOE-UCLA)P05114
IntAct (EBI)P05114
BioGRIDHMGN1
STRING (EMBL)HMGN1
ZODIACHMGN1
Ontologies - Pathways
QuickGOP05114
Ontology : AmiGOpyrimidine dimer repair by nucleotide-excision repair  chromatin  DNA binding  chromatin binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytoplasm  transcription-coupled nucleotide-excision repair  chromatin organization  regulation of transcription by RNA polymerase II  response to UV-B  response to UV-C  nucleosomal DNA binding  positive regulation of DNA-templated transcription, elongation  regulation of development, heterochronic  post-embryonic camera-type eye morphogenesis  regulation of epithelial cell proliferation  positive regulation of NAD+ ADP-ribosyltransferase activity  
Ontology : EGO-EBIpyrimidine dimer repair by nucleotide-excision repair  chromatin  DNA binding  chromatin binding  nucleus  nucleus  nucleoplasm  nucleoplasm  cytoplasm  transcription-coupled nucleotide-excision repair  chromatin organization  regulation of transcription by RNA polymerase II  response to UV-B  response to UV-C  nucleosomal DNA binding  positive regulation of DNA-templated transcription, elongation  regulation of development, heterochronic  post-embryonic camera-type eye morphogenesis  regulation of epithelial cell proliferation  positive regulation of NAD+ ADP-ribosyltransferase activity  
Pathways : BIOCARTAp38 MAPK Signaling Pathway [Genes]   
Pathways : KEGGHerpes simplex infection   
NDEx NetworkHMGN1
Atlas of Cancer Signalling NetworkHMGN1
Wikipedia pathwaysHMGN1
Orthology - Evolution
OrthoDB3150
GeneTree (enSembl)ENSG00000205581
Phylogenetic Trees/Animal Genes : TreeFamHMGN1
Homologs : HomoloGeneHMGN1
Homology/Alignments : Family Browser (UCSC)HMGN1
Gene fusions - Rearrangements
Fusion Cancer (Beijing)FN1 [2q35]  -  HMGN1 [21q22.2]  [FUSC003437]
Fusion : QuiverHMGN1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN1
dbVarHMGN1
ClinVarHMGN1
MonarchHMGN1
1000_GenomesHMGN1 
Exome Variant ServerHMGN1
GNOMAD BrowserENSG00000205581
Varsome BrowserHMGN1
ACMGHMGN1 variants
VarityP05114
Genomic Variants (DGV)HMGN1 [DGVbeta]
DECIPHERHMGN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMGN1 
Mutations
ICGC Data PortalHMGN1 
TCGA Data PortalHMGN1 
Broad Tumor PortalHMGN1
OASIS PortalHMGN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGN1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHMGN1
Mutations and Diseases : HGMDHMGN1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHMGN1
DgiDB (Drug Gene Interaction Database)HMGN1
DoCM (Curated mutations)HMGN1
CIViC (Clinical Interpretations of Variants in Cancer)HMGN1
Cancer3DHMGN1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM163920   
Orphanet
DisGeNETHMGN1
MedgenHMGN1
Genetic Testing Registry HMGN1
NextProtP05114 [Medical]
GENETestsHMGN1
Target ValidationHMGN1
Huge Navigator HMGN1 [HugePedia]
ClinGenHMGN1
Clinical trials, drugs, therapy
MyCancerGenomeHMGN1
Protein Interactions : CTDHMGN1
Pharm GKB GenePA35088
PharosP05114
Clinical trialHMGN1
Miscellaneous
canSAR (ICR)HMGN1
HarmonizomeHMGN1
DataMed IndexHMGN1
Probes
Litterature
PubMed74 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHMGN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:36 CEST 2021

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