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HMGN1 (high mobility group nucleosome binding domain 1)

Identity

Alias_namesHMG14
high-mobility group (nonhistone chromosomal) protein 14
high-mobility group nucleosome binding domain 1
Alias_symbol (synonym)FLJ27265
FLJ31471
MGC104230
MGC117425
Other alias
HGNC (Hugo) HMGN1
LocusID (NCBI) 3150
Atlas_Id 46588
Location 21q22.2  [Link to chromosome band 21q22]
Location_base_pair Starts at 39342315 and ends at 39349121 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FN1 (2q35) / HMGN1 (21q22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMGN1   4984
Cards
Entrez_Gene (NCBI)HMGN1  3150  high mobility group nucleosome binding domain 1
AliasesHMG14
GeneCards (Weizmann)HMGN1
Ensembl hg19 (Hinxton)ENSG00000205581 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205581 [Gene_View]  chr21:39342315-39349121 [Contig_View]  HMGN1 [Vega]
ICGC DataPortalENSG00000205581
TCGA cBioPortalHMGN1
AceView (NCBI)HMGN1
Genatlas (Paris)HMGN1
WikiGenes3150
SOURCE (Princeton)HMGN1
Genetics Home Reference (NIH)HMGN1
Genomic and cartography
GoldenPath hg38 (UCSC)HMGN1  -     chr21:39342315-39349121 -  21q22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGN1  -     21q22.2   [Description]    (hg19-Feb_2009)
EnsemblHMGN1 - 21q22.2 [CytoView hg19]  HMGN1 - 21q22.2 [CytoView hg38]
Mapping of homologs : NCBIHMGN1 [Mapview hg19]  HMGN1 [Mapview hg38]
OMIM163920   
Gene and transcription
Genbank (Entrez)AB209245 AK056033 AK130775 AK315410 AL582106
RefSeq transcript (Entrez)NM_004965
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMGN1
Cluster EST : UnigeneHs.356285 [ NCBI ]
CGAP (NCI)Hs.356285
Alternative Splicing GalleryENSG00000205581
Gene ExpressionHMGN1 [ NCBI-GEO ]   HMGN1 [ EBI - ARRAY_EXPRESS ]   HMGN1 [ SEEK ]   HMGN1 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3150
GTEX Portal (Tissue expression)HMGN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05114   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP05114  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05114
Splice isoforms : SwissVarP05114
PhosPhoSitePlusP05114
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam   
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
Conserved Domain (NCBI)HMGN1
DMDM Disease mutations3150
Blocks (Seattle)HMGN1
SuperfamilyP05114
Human Protein AtlasENSG00000205581
Peptide AtlasP05114
HPRD01231
Protein Interaction databases
DIP (DOE-UCLA)P05114
IntAct (EBI)P05114
FunCoupENSG00000205581
BioGRIDHMGN1
STRING (EMBL)HMGN1
ZODIACHMGN1
Ontologies - Pathways
QuickGOP05114
Ontology : AmiGOpyrimidine dimer repair by nucleotide-excision repair  chromatin  DNA binding  nucleus  nucleoplasm  cytoplasm  transcription-coupled nucleotide-excision repair  chromatin organization  regulation of transcription from RNA polymerase II promoter  response to UV-B  response to UV-C  nucleosomal DNA binding  positive regulation of DNA-templated transcription, elongation  regulation of development, heterochronic  post-embryonic camera-type eye morphogenesis  regulation of epithelial cell proliferation  positive regulation of NAD+ ADP-ribosyltransferase activity  
Ontology : EGO-EBIpyrimidine dimer repair by nucleotide-excision repair  chromatin  DNA binding  nucleus  nucleoplasm  cytoplasm  transcription-coupled nucleotide-excision repair  chromatin organization  regulation of transcription from RNA polymerase II promoter  response to UV-B  response to UV-C  nucleosomal DNA binding  positive regulation of DNA-templated transcription, elongation  regulation of development, heterochronic  post-embryonic camera-type eye morphogenesis  regulation of epithelial cell proliferation  positive regulation of NAD+ ADP-ribosyltransferase activity  
Pathways : BIOCARTAp38 MAPK Signaling Pathway [Genes]   
Pathways : KEGGHerpes simplex infection   
NDEx NetworkHMGN1
Atlas of Cancer Signalling NetworkHMGN1
Wikipedia pathwaysHMGN1
Orthology - Evolution
OrthoDB3150
GeneTree (enSembl)ENSG00000205581
Phylogenetic Trees/Animal Genes : TreeFamHMGN1
HOVERGENP05114
HOGENOMP05114
Homologs : HomoloGeneHMGN1
Homology/Alignments : Family Browser (UCSC)HMGN1
Gene fusions - Rearrangements
Fusion Cancer (Beijing)FN1 [2q35]  -  HMGN1 [21q22.2]  [FUSC003437]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN1
dbVarHMGN1
ClinVarHMGN1
1000_GenomesHMGN1 
Exome Variant ServerHMGN1
ExAC (Exome Aggregation Consortium)HMGN1 (select the gene name)
Genetic variants : HAPMAP3150
Genomic Variants (DGV)HMGN1 [DGVbeta]
DECIPHERHMGN1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMGN1 
Mutations
ICGC Data PortalHMGN1 
TCGA Data PortalHMGN1 
Broad Tumor PortalHMGN1
OASIS PortalHMGN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMGN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMGN1
DgiDB (Drug Gene Interaction Database)HMGN1
DoCM (Curated mutations)HMGN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMGN1 (select a term)
intoGenHMGN1
Cancer3DHMGN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM163920   
Orphanet
MedgenHMGN1
Genetic Testing Registry HMGN1
NextProtP05114 [Medical]
TSGene3150
GENETestsHMGN1
Huge Navigator HMGN1 [HugePedia]
snp3D : Map Gene to Disease3150
BioCentury BCIQHMGN1
ClinGenHMGN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3150
Chemical/Pharm GKB GenePA35088
Clinical trialHMGN1
Miscellaneous
canSAR (ICR)HMGN1 (select the gene name)
Probes
Litterature
PubMed52 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGN1
EVEXHMGN1
GoPubMedHMGN1
iHOPHMGN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:05 CEST 2017

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