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HMGN2 (high mobility group nucleosomal binding domain 2)

Identity

Other namesHMG17
HGNC (Hugo) HMGN2
LocusID (NCBI) 3151
Location 1p36.11
Location_base_pair Starts at 26798902 and ends at 26803133 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HMGN2   4986
Cards
Entrez_Gene (NCBI)HMGN2  3151  high mobility group nucleosomal binding domain 2
GeneCards (Weizmann)HMGN2
Ensembl hg19 (Hinxton) [Gene_View]  chr1:26798902-26803133 [Contig_View]  HMGN2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:26798902-26803133 [Contig_View]  HMGN2 [Vega]
cBioPortalHMGN2
AceView (NCBI)HMGN2
Genatlas (Paris)HMGN2
WikiGenes3151
SOURCE (Princeton)HMGN2
Genomic and cartography
GoldenPath hg19 (UCSC)HMGN2  -     chr1:26798902-26803133 +  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HMGN2  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblHMGN2 - 1p36.11 [CytoView hg19]  HMGN2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIHMGN2 [Mapview hg19]  HMGN2 [Mapview hg38]
OMIM163910   
Gene and transcription
Genbank (Entrez)AK026562 AU100588 BC000378 BC003050 BC003689
RefSeq transcript (Entrez)NM_005517
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838576 NW_004929289
Consensus coding sequences : CCDS (NCBI)HMGN2
Cluster EST : UnigeneHs.181163 [ NCBI ]
CGAP (NCI)Hs.181163
Alternative Splicing : Fast-db (Paris)GSHG0000279
Gene ExpressionHMGN2 [ NCBI-GEO ]     HMGN2 [ SEEK ]   HMGN2 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05204 (Uniprot)
NextProtP05204  [Medical]
With graphics : InterProP05204
Splice isoforms : SwissVarP05204 (Swissvar)
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam   
Related proteins : CluSTrP05204
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
DMDM Disease mutations3151
Blocks (Seattle)P05204
Peptide AtlasP05204
HPRD01230
IPIIPI00217950   
Protein Interaction databases
DIP (DOE-UCLA)P05204
IntAct (EBI)P05204
BioGRIDHMGN2
IntegromeDBHMGN2
STRING (EMBL)HMGN2
Ontologies - Pathways
QuickGOP05204
Ontology : AmiGOchromatin  nucleus  cytoplasm  nucleosomal DNA binding  poly(A) RNA binding  
Ontology : EGO-EBIchromatin  nucleus  cytoplasm  nucleosomal DNA binding  poly(A) RNA binding  
Protein Interaction DatabaseHMGN2
DoCM (Curated mutations)HMGN2
Wikipedia pathwaysHMGN2
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHMGN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN2
dbVarHMGN2
ClinVarHMGN2
1000_GenomesHMGN2 
Exome Variant ServerHMGN2
SNP (GeneSNP Utah)HMGN2
SNP : HGBaseHMGN2
Genetic variants : HAPMAPHMGN2
Genomic VariantsHMGN2  HMGN2 [DGVbeta]
Mutations
Somatic Mutations in Cancer : COSMICHMGN2 
CONAN: Copy Number AnalysisHMGN2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:26798902-26803133
Mutations and Diseases : HGMDHMGN2
OMIM163910   
MedgenHMGN2
NextProtP05204 [Medical]
GENETestsHMGN2
Disease Genetic AssociationHMGN2
Huge Navigator HMGN2 [HugePedia]  HMGN2 [HugeCancerGEM]
snp3D : Map Gene to Disease3151
DGIdb (Drug Gene Interaction db)HMGN2
General knowledge
Homologs : HomoloGeneHMGN2
Homology/Alignments : Family Browser (UCSC)HMGN2
Phylogenetic Trees/Animal Genes : TreeFamHMGN2
Chemical/Protein Interactions : CTD3151
Chemical/Pharm GKB GenePA35089
Clinical trialHMGN2
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineHMGN2
GoPubMedHMGN2
iHOPHMGN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 22:01:39 CET 2014

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