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HMGN2 (high mobility group nucleosomal binding domain 2)

Identity

Other namesHMG17
HGNC (Hugo) HMGN2
LocusID (NCBI) 3151
Location 1p36.11
Location_base_pair Starts at 26798902 and ends at 26803133 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HMGN2   4986
Entrez_Gene (NCBI)HMGN2  3151  high mobility group nucleosomal binding domain 2
Cards
GeneCards (Weizmann)HMGN2
Ensembl (Hinxton)ENSG00000198830 [Gene_View]  chr1:26798902-26803133 [Contig_View]  HMGN2 [Vega]
AceView (NCBI)HMGN2
Genatlas (Paris)HMGN2
SOURCE (Stanford)NM_005517
Genomic and cartography
GoldenPath (UCSC)HMGN2  -  1p36.11   chr1:26798902-26803133 +  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblHMGN2 - 1p36.11 [CytoView]
Mapping of homologs : NCBIHMGN2 [Mapview]
OMIM163910   
Gene and transcription
Genbank (Entrez)AK026562 AU100588 BC000378 BC003050 BC003689
RefSeq transcript (SRS)NM_005517
RefSeq transcript (Entrez)NM_005517
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NT_004610 NW_001838576 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_004610 NW_001838576 NW_004077990
Consensus coding sequences : CCDS (NCBI)HMGN2
Cluster EST : UnigeneHs.181163 [ SRS ] Hs.181163 [ NCBI ]
CGAP (NCI)Hs.181163
Alternative Splicing : Fast-db (Paris)GSHG0000279
Alternative Splicing GalleryENSG00000198830
Gene ExpressionHMGN2 [ NCBI-GEO ]   HMGN2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05204 (SRS) P05204 (Uniprot)
NextProtP05204
With graphics : InterProP05204
Splice isoforms : SwissVarP05204(Swissvar)
Domaine pattern : Prosite (SRS)HMG14_17 (PS00355)   
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (SRS)HMGN_fam   
Domains : Interpro (EBI)HMGN_fam   
Related proteins : CluSTrP05204
Domain families : Pfam (SRS)HMG14_17 (PF01101)   
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
DMDM3151
Blocks (Seattle)P05204
Human Protein AtlasENSG00000198830
HPRD01230
IPIIPI00217950   
Protein Interaction databases
DIP (DOE-UCLA)P05204
IntAct (EBI)P05204
FunCoupENSG00000198830
REACTOMEHMGN2
Protein Interaction Database3151
BioGRIDHMGN2
InParanoidP05204
Interologous Interaction database P05204
IntegromeDBHMGN2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HMGN2
SNP (GeneSNP Utah)HMGN2
SNP : HGBaseHMGN2
Genetic variants : HAPMAPHMGN2
Somatic Mutations in Cancer : COSMICHMGN2 
CONAN: Copy Number AnalysisHMGN2 
Mutations and Diseases : HGMDHMGN2
OMIM163910   
GENETests163910   
Disease Genetic AssociationHMGN2
Huge Navigator HMGN2 [HugePedia]  HMGN2 [HugeCancerGEM]
Genomic VariantsHMGN2  HMGN2 [DGVbeta]
snp3D : Map Gene to Disease3151
General knowledge
Homologs : HomoloGeneHMGN2
Homology/Alignments : Family Browser (UCSC)HMGN2
Phylogenetic Trees/Animal Genes : TreeFamHMGN2
Chemical/Protein Interactions : CTD3151
Chemical/Pharm GKB GenePA35089
Clinical trialHMGN2
Cancer Resource (Charite)ENSG00000198830
Ontology : AmiGOchromatin  DNA binding  nucleus  nucleus  cytoplasm  chromatin organization  regulation of transcription, DNA-dependent  nucleosomal DNA binding  
Ontology : EGO-EBIchromatin  DNA binding  nucleus  nucleus  cytoplasm  chromatin organization  regulation of transcription, DNA-dependent  nucleosomal DNA binding  
Other databases
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
PubGeneHMGN2
iHOPHMGN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:46:19 CEST 2013
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