Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HMGN2 (high mobility group nucleosomal binding domain 2)

Identity

Other namesHMG17
HGNC (Hugo) HMGN2
LocusID (NCBI) 3151
Location 1p36.11
Location_base_pair Starts at 26798902 and ends at 26803133 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)HMGN2   4986
Cards
Entrez_Gene (NCBI)HMGN2  3151  high mobility group nucleosomal binding domain 2
GeneCards (Weizmann)HMGN2
Ensembl (Hinxton) [Gene_View]  chr1:26798902-26803133 [Contig_View]  HMGN2 [Vega]
cBioPortalHMGN2
AceView (NCBI)HMGN2
Genatlas (Paris)HMGN2
WikiGenes3151
SOURCE (Princeton)NM_005517
Genomic and cartography
GoldenPath (UCSC)HMGN2  -  1p36.11   chr1:26798902-26803133 +  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblHMGN2 - 1p36.11 [CytoView]
Mapping of homologs : NCBIHMGN2 [Mapview]
OMIM163910   
Gene and transcription
Genbank (Entrez)AK026562 AU100588 BC000378 BC003050 BC003689
RefSeq transcript (Entrez)NM_005517
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NT_032977 NW_001838576 NW_004929289
Consensus coding sequences : CCDS (NCBI)HMGN2
Cluster EST : UnigeneHs.181163 [ NCBI ]
CGAP (NCI)Hs.181163
Alternative Splicing : Fast-db (Paris)GSHG0000279
Gene ExpressionHMGN2 [ NCBI-GEO ]     HMGN2 [ SEEK ]   HMGN2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05204 (Uniprot)
NextProtP05204  [Medical]
With graphics : InterProP05204
Splice isoforms : SwissVarP05204 (Swissvar)
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam [organisation]  
Related proteins : CluSTrP05204
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
DMDM Disease mutations3151
Blocks (Seattle)P05204
Peptide AtlasP05204
HPRD01230
IPIIPI00217950   
Protein Interaction databases
DIP (DOE-UCLA)P05204
IntAct (EBI)P05204
BioGRIDHMGN2
InParanoidP05204
Interologous Interaction database P05204
IntegromeDBHMGN2
STRING (EMBL)HMGN2
Ontologies - Pathways
Ontology : AmiGOchromatin  nucleus  cytoplasm  nucleosomal DNA binding  poly(A) RNA binding  
Ontology : EGO-EBIchromatin  nucleus  cytoplasm  nucleosomal DNA binding  poly(A) RNA binding  
Protein Interaction DatabaseHMGN2
Wikipedia pathwaysHMGN2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)HMGN2
snp3D : Map Gene to Disease3151
SNP (GeneSNP Utah)HMGN2
SNP : HGBaseHMGN2
Genetic variants : HAPMAPHMGN2
Exome VariantHMGN2
1000_GenomesHMGN2 
Somatic Mutations in Cancer : COSMICHMGN2 
CONAN: Copy Number AnalysisHMGN2 
Mutations and Diseases : HGMDHMGN2
Mutations and Diseases : intOGenHMGN2
Genomic VariantsHMGN2  HMGN2 [DGVbeta]
dbVarHMGN2
ClinVarHMGN2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM163910   
MedgenHMGN2
GENETestsHMGN2
Disease Genetic AssociationHMGN2
Huge Navigator HMGN2 [HugePedia]  HMGN2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneHMGN2
Homology/Alignments : Family Browser (UCSC)HMGN2
Phylogenetic Trees/Animal Genes : TreeFamHMGN2
Chemical/Protein Interactions : CTD3151
Chemical/Pharm GKB GenePA35089
Clinical trialHMGN2
Other databases
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
CoreMineHMGN2
iHOPHMGN2
OncoSearchHMGN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:49:39 CEST 2014

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