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HMGN2 (high mobility group nucleosomal binding domain 2)

Identity

Other namesHMG17
HGNC (Hugo) HMGN2
LocusID (NCBI) 3151
Atlas_Id 40836
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 26798902 and ends at 26803133 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CACNA2D4 (12p13.33) / HMGN2 (1p36.11)CALD1 (7q33) / HMGN2 (1p36.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMGN2   4986
Cards
Entrez_Gene (NCBI)HMGN2  3151  high mobility group nucleosomal binding domain 2
AliasesHMG17
GeneCards (Weizmann)HMGN2
Ensembl hg19 (Hinxton)ENSG00000198830 [Gene_View]  chr1:26798902-26803133 [Contig_View]  HMGN2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000198830 [Gene_View]  chr1:26798902-26803133 [Contig_View]  HMGN2 [Vega]
ICGC DataPortalENSG00000198830
TCGA cBioPortalHMGN2
AceView (NCBI)HMGN2
Genatlas (Paris)HMGN2
WikiGenes3151
SOURCE (Princeton)HMGN2
Genomic and cartography
GoldenPath hg19 (UCSC)HMGN2  -     chr1:26798902-26803133 +  1p36.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HMGN2  -     1p36.11   [Description]    (hg38-Dec_2013)
EnsemblHMGN2 - 1p36.11 [CytoView hg19]  HMGN2 - 1p36.11 [CytoView hg38]
Mapping of homologs : NCBIHMGN2 [Mapview hg19]  HMGN2 [Mapview hg38]
OMIM163910   
Gene and transcription
Genbank (Entrez)AK026562 AU100588 BC000378 BC003050 BC003689
RefSeq transcript (Entrez)NM_005517
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)HMGN2
Cluster EST : UnigeneHs.181163 [ NCBI ]
CGAP (NCI)Hs.181163
Alternative Splicing GalleryENSG00000198830
Gene ExpressionHMGN2 [ NCBI-GEO ]   HMGN2 [ EBI - ARRAY_EXPRESS ]   HMGN2 [ SEEK ]   HMGN2 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3151
GTEX Portal (Tissue expression)HMGN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP05204 (Uniprot)
NextProtP05204  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP05204
Splice isoforms : SwissVarP05204 (Swissvar)
PhosPhoSitePlusP05204
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam   
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
DMDM Disease mutations3151
Blocks (Seattle)HMGN2
SuperfamilyP05204
Human Protein AtlasENSG00000198830
Peptide AtlasP05204
HPRD01230
IPIIPI00217950   
Protein Interaction databases
DIP (DOE-UCLA)P05204
IntAct (EBI)P05204
FunCoupENSG00000198830
BioGRIDHMGN2
STRING (EMBL)HMGN2
ZODIACHMGN2
Ontologies - Pathways
QuickGOP05204
Ontology : AmiGOchromatin  protein binding  nucleus  cytoplasm  nucleosomal DNA binding  poly(A) RNA binding  
Ontology : EGO-EBIchromatin  protein binding  nucleus  cytoplasm  nucleosomal DNA binding  poly(A) RNA binding  
NDEx Network
Atlas of Cancer Signalling NetworkHMGN2
Wikipedia pathwaysHMGN2
Orthology - Evolution
OrthoDB3151
GeneTree (enSembl)ENSG00000198830
Phylogenetic Trees/Animal Genes : TreeFamHMGN2
Homologs : HomoloGeneHMGN2
Homology/Alignments : Family Browser (UCSC)HMGN2
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerHMGN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN2
dbVarHMGN2
ClinVarHMGN2
1000_GenomesHMGN2 
Exome Variant ServerHMGN2
ExAC (Exome Aggregation Consortium)HMGN2 (select the gene name)
Genetic variants : HAPMAP3151
Genomic Variants (DGV)HMGN2 [DGVbeta]
Mutations
ICGC Data PortalHMGN2 
TCGA Data PortalHMGN2 
Broad Tumor PortalHMGN2
OASIS PortalHMGN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGN2 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMGN2
DgiDB (Drug Gene Interaction Database)HMGN2
DoCM (Curated mutations)HMGN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMGN2 (select a term)
intoGenHMGN2
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)1:26798902-26803133  ENSG00000198830
CONAN: Copy Number AnalysisHMGN2 
Mutations and Diseases : HGMDHMGN2
OMIM163910   
MedgenHMGN2
Genetic Testing Registry HMGN2
NextProtP05204 [Medical]
TSGene3151
GENETestsHMGN2
Huge Navigator HMGN2 [HugePedia]
snp3D : Map Gene to Disease3151
BioCentury BCIQHMGN2
ClinGenHMGN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3151
Chemical/Pharm GKB GenePA35089
Clinical trialHMGN2
Miscellaneous
canSAR (ICR)HMGN2 (select the gene name)
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGN2
EVEXHMGN2
GoPubMedHMGN2
iHOPHMGN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 9 19:03:50 CEST 2016

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