Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HMGN2P46 (high mobility group nucleosomal binding domain 2 pseudogene 46)

Identity

Alias_namesC15orf21
chromosome 15 open reading frame 21
high-mobility group nucleosomal binding domain 2 pseudogene 46
Alias_symbol (synonym)FLJ39426
D-PCa-2
Other alias
HGNC (Hugo) HMGN2P46
LocusID (NCBI) 283651
Atlas_Id 51790
Location 15q21.1  [Link to chromosome band 15q21]
Location_base_pair Starts at 45511136 and ends at 45556730 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ETV1 (7p21.2) / HMGN2P46 (15q21.1)HMGN2P46 (15q21.1) / ETV1 (7p21.2)HMGN2P46 (15q21.1) / MYC (8q24.21)
SHANK2 (11q13.3) / HMGN2P46 (15q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  Prostate tumors: an overview


External links

Nomenclature
HGNC (Hugo)HMGN2P46   26817
Cards
Entrez_Gene (NCBI)HMGN2P46  283651  high mobility group nucleosomal binding domain 2 pseudogene 46
AliasesC15orf21; D-PCa-2
GeneCards (Weizmann)HMGN2P46
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr15:45511136-45556730 [Contig_View]  HMGN2P46 [Vega]
TCGA cBioPortalHMGN2P46
AceView (NCBI)HMGN2P46
Genatlas (Paris)HMGN2P46
WikiGenes283651
SOURCE (Princeton)HMGN2P46
Genetics Home Reference (NIH)HMGN2P46
Genomic and cartography
GoldenPath hg38 (UCSC)HMGN2P46  -     chr15:45511136-45556730 +  15q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGN2P46  -     15q21.1   [Description]    (hg19-Feb_2009)
EnsemblHMGN2P46 - 15q21.1 [CytoView hg19]  HMGN2P46 - 15q21.1 [CytoView hg38]
Mapping of homologs : NCBIHMGN2P46 [Mapview hg19]  HMGN2P46 [Mapview hg38]
OMIM611314   
Gene and transcription
Genbank (Entrez)AK096745 AY271964 AY271965 AY271966 AY271967
RefSeq transcript (Entrez)NM_001005266 NM_001005267 NM_001005268 NM_001005269 NM_173609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMGN2P46
Cluster EST : UnigeneHs.574240 [ NCBI ]
CGAP (NCI)Hs.574240
Gene ExpressionHMGN2P46 [ NCBI-GEO ]   HMGN2P46 [ EBI - ARRAY_EXPRESS ]   HMGN2P46 [ SEEK ]   HMGN2P46 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN2P46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)283651
GTEX Portal (Tissue expression)HMGN2P46
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86SG4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86SG4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86SG4
Splice isoforms : SwissVarQ86SG4
PhosPhoSitePlusQ86SG4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HMGN2P46
DMDM Disease mutations283651
Blocks (Seattle)HMGN2P46
SuperfamilyQ86SG4
Peptide AtlasQ86SG4
HPRD16622
IPIIPI00465134   IPI00167483   IPI00465136   
Protein Interaction databases
DIP (DOE-UCLA)Q86SG4
IntAct (EBI)Q86SG4
BioGRIDHMGN2P46
STRING (EMBL)HMGN2P46
ZODIACHMGN2P46
Ontologies - Pathways
QuickGOQ86SG4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkHMGN2P46
Atlas of Cancer Signalling NetworkHMGN2P46
Wikipedia pathwaysHMGN2P46
Orthology - Evolution
OrthoDB283651
Phylogenetic Trees/Animal Genes : TreeFamHMGN2P46
HOVERGENQ86SG4
HOGENOMQ86SG4
Homologs : HomoloGeneHMGN2P46
Homology/Alignments : Family Browser (UCSC)HMGN2P46
Gene fusions - Rearrangements
Fusion : MitelmanHMGN2P46/ETV1 [15q21.1/7p21.2]  
Fusion : MitelmanHMGN2P46/MYC [15q21.1/8q24.21]  [t(8;15)(q24;q21)]  
Fusion : MitelmanSHANK2/HMGN2P46 [11q13.3/15q21.1]  [t(11;15)(q13;q21)]  
Tumor Fusion PortalHMGN2P46
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGN2P46 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN2P46
dbVarHMGN2P46
ClinVarHMGN2P46
1000_GenomesHMGN2P46 
Exome Variant ServerHMGN2P46
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP283651
Genomic Variants (DGV)HMGN2P46 [DGVbeta]
DECIPHERHMGN2P46 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMGN2P46 
Mutations
ICGC Data PortalHMGN2P46 
TCGA Data PortalHMGN2P46 
Broad Tumor PortalHMGN2P46
OASIS PortalHMGN2P46 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHMGN2P46
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMGN2P46
DgiDB (Drug Gene Interaction Database)HMGN2P46
DoCM (Curated mutations)HMGN2P46 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMGN2P46 (select a term)
intoGenHMGN2P46
Cancer3DHMGN2P46(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611314   
Orphanet
DisGeNETHMGN2P46
MedgenHMGN2P46
Genetic Testing Registry HMGN2P46
NextProtQ86SG4 [Medical]
TSGene283651
GENETestsHMGN2P46
Target ValidationHMGN2P46
Huge Navigator HMGN2P46 [HugePedia]
snp3D : Map Gene to Disease283651
BioCentury BCIQHMGN2P46
ClinGenHMGN2P46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD283651
Chemical/Pharm GKB GenePA134909825
Clinical trialHMGN2P46
Miscellaneous
canSAR (ICR)HMGN2P46 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGN2P46
EVEXHMGN2P46
GoPubMedHMGN2P46
iHOPHMGN2P46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:16:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.