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HMGN3-AS1 (HMGN3 antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) HMGN3-AS1
LocusID (NCBI) 100288198
Atlas_Id 64351
Location 6q14.1  [Link to chromosome band 6q14]
Location_base_pair Starts at 79233674 and ends at 79236800 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMGN3-AS1   48984
Cards
Entrez_Gene (NCBI)HMGN3-AS1  100288198  HMGN3 antisense RNA 1
Aliases
GeneCards (Weizmann)HMGN3-AS1
Ensembl hg19 (Hinxton)ENSG00000270362 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000270362 [Gene_View]  ENSG00000270362 [Sequence]  chr6:79233674-79236800 [Contig_View]  HMGN3-AS1 [Vega]
ICGC DataPortalENSG00000270362
TCGA cBioPortalHMGN3-AS1
AceView (NCBI)HMGN3-AS1
Genatlas (Paris)HMGN3-AS1
WikiGenes100288198
SOURCE (Princeton)HMGN3-AS1
Genetics Home Reference (NIH)HMGN3-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)HMGN3-AS1  -     chr6:79233674-79236800 +  6q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGN3-AS1  -     6q14.1   [Description]    (hg19-Feb_2009)
EnsemblHMGN3-AS1 - 6q14.1 [CytoView hg19]  HMGN3-AS1 - 6q14.1 [CytoView hg38]
Mapping of homologs : NCBIHMGN3-AS1 [Mapview hg19]  HMGN3-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA256476 BC042096 DA046558
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMGN3-AS1
Cluster EST : UnigeneHs.586270 [ NCBI ]
CGAP (NCI)Hs.586270
Alternative Splicing GalleryENSG00000270362
Gene ExpressionHMGN3-AS1 [ NCBI-GEO ]   HMGN3-AS1 [ EBI - ARRAY_EXPRESS ]   HMGN3-AS1 [ SEEK ]   HMGN3-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN3-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100288198
GTEX Portal (Tissue expression)HMGN3-AS1
Human Protein AtlasENSG00000270362-HMGN3-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HMGN3-AS1
DMDM Disease mutations100288198
Blocks (Seattle)HMGN3-AS1
Human Protein Atlas [tissue]ENSG00000270362-HMGN3-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000270362
BioGRIDHMGN3-AS1
STRING (EMBL)HMGN3-AS1
ZODIACHMGN3-AS1
Ontologies - Pathways
Huge Navigator HMGN3-AS1 [HugePedia]
snp3D : Map Gene to Disease100288198
BioCentury BCIQHMGN3-AS1
ClinGenHMGN3-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100288198
Clinical trialHMGN3-AS1
Miscellaneous
canSAR (ICR)HMGN3-AS1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGN3-AS1
EVEXHMGN3-AS1
GoPubMedHMGN3-AS1
iHOPHMGN3-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:49:06 CEST 2018

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