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HMGN4 (high mobility group nucleosomal binding domain 4)

Identity

Alias (NCBI)HMG17L3
NHC
HGNC (Hugo) HMGN4
HGNC Alias symbNHC
HGNC Previous nameHMG17L3
HGNC Previous namehigh-mobility group (nonhistone chromosomal) protein 17-like 3
LocusID (NCBI) 10473
Atlas_Id 47225
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26538366 and ends at 26546933 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HMGN4 (6p22.2) / FBXO42 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)HMGN4   4989
Cards
Entrez_Gene (NCBI)HMGN4  10473  high mobility group nucleosomal binding domain 4
AliasesHMG17L3; NHC
GeneCards (Weizmann)HMGN4
Ensembl hg19 (Hinxton)ENSG00000182952 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182952 [Gene_View]  ENSG00000182952 [Sequence]  chr6:26538366-26546933 [Contig_View]  HMGN4 [Vega]
ICGC DataPortalENSG00000182952
TCGA cBioPortalHMGN4
AceView (NCBI)HMGN4
Genatlas (Paris)HMGN4
WikiGenes10473
SOURCE (Princeton)HMGN4
Genetics Home Reference (NIH)HMGN4
Genomic and cartography
GoldenPath hg38 (UCSC)HMGN4  -     chr6:26538366-26546933 +  6p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGN4  -     6p22.2   [Description]    (hg19-Feb_2009)
GoldenPathHMGN4 - 6p22.2 [CytoView hg19]  HMGN4 - 6p22.2 [CytoView hg38]
ImmunoBaseENSG00000182952
genome Data Viewer NCBIHMGN4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK311841 AU143224 BC001282 BC035998 BT009824
RefSeq transcript (Entrez)NM_006353
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMGN4
Alternative Splicing GalleryENSG00000182952
Gene ExpressionHMGN4 [ NCBI-GEO ]   HMGN4 [ EBI - ARRAY_EXPRESS ]   HMGN4 [ SEEK ]   HMGN4 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN4 [ Firebrowse - Broad ]
GenevisibleExpression of HMGN4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10473
GTEX Portal (Tissue expression)HMGN4
Human Protein AtlasENSG00000182952-HMGN4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00479   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00479  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00479
Splice isoforms : SwissVarO00479
PhosPhoSitePlusO00479
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam   
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
Conserved Domain (NCBI)HMGN4
DMDM Disease mutations10473
Blocks (Seattle)HMGN4
SuperfamilyO00479
Human Protein Atlas [tissue]ENSG00000182952-HMGN4 [tissue]
Peptide AtlasO00479
HPRD17111
IPIIPI00220484   
Protein Interaction databases
DIP (DOE-UCLA)O00479
IntAct (EBI)O00479
FunCoupENSG00000182952
BioGRIDHMGN4
STRING (EMBL)HMGN4
ZODIACHMGN4
Ontologies - Pathways
QuickGOO00479
Ontology : AmiGOchromatin  protein binding  nucleus  nucleosomal DNA binding  
Ontology : EGO-EBIchromatin  protein binding  nucleus  nucleosomal DNA binding  
NDEx NetworkHMGN4
Atlas of Cancer Signalling NetworkHMGN4
Wikipedia pathwaysHMGN4
Orthology - Evolution
OrthoDB10473
GeneTree (enSembl)ENSG00000182952
Phylogenetic Trees/Animal Genes : TreeFamHMGN4
HOGENOMO00479
Homologs : HomoloGeneHMGN4
Homology/Alignments : Family Browser (UCSC)HMGN4
Gene fusions - Rearrangements
Fusion : QuiverHMGN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN4
dbVarHMGN4
ClinVarHMGN4
MonarchHMGN4
1000_GenomesHMGN4 
Exome Variant ServerHMGN4
GNOMAD BrowserENSG00000182952
Varsome BrowserHMGN4
Genetic variants : HAPMAP10473
Genomic Variants (DGV)HMGN4 [DGVbeta]
DECIPHERHMGN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMGN4 
Mutations
ICGC Data PortalHMGN4 
TCGA Data PortalHMGN4 
Broad Tumor PortalHMGN4
OASIS PortalHMGN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGN4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHMGN4
Mutations and Diseases : HGMDHMGN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMGN4
DgiDB (Drug Gene Interaction Database)HMGN4
DoCM (Curated mutations)HMGN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMGN4 (select a term)
intoGenHMGN4
Cancer3DHMGN4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHMGN4
MedgenHMGN4
Genetic Testing Registry HMGN4
NextProtO00479 [Medical]
TSGene10473
GENETestsHMGN4
Target ValidationHMGN4
Huge Navigator HMGN4 [HugePedia]
snp3D : Map Gene to Disease10473
BioCentury BCIQHMGN4
ClinGenHMGN4
Clinical trials, drugs, therapy
Protein Interactions : CTD10473
Pharm GKB GenePA35090
Clinical trialHMGN4
Miscellaneous
canSAR (ICR)HMGN4 (select the gene name)
HarmonizomeHMGN4
DataMed IndexHMGN4
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGN4
EVEXHMGN4
GoPubMedHMGN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 14 14:14:31 CEST 2020

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