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HMGN4 (high mobility group nucleosomal binding domain 4)

Identity

Alias_namesHMG17L3
high-mobility group (nonhistone chromosomal) protein 17-like 3
Alias_symbol (synonym)NHC
Other alias
HGNC (Hugo) HMGN4
LocusID (NCBI) 10473
Atlas_Id 47225
Location 6p22.2  [Link to chromosome band 6p22]
Location_base_pair Starts at 26538572 and ends at 26547164 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HMGN4 (6p22.2) / FBXO42 (1p36.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMGN4   4989
Cards
Entrez_Gene (NCBI)HMGN4  10473  high mobility group nucleosomal binding domain 4
AliasesHMG17L3; NHC
GeneCards (Weizmann)HMGN4
Ensembl hg19 (Hinxton)ENSG00000182952 [Gene_View]  chr6:26538572-26547164 [Contig_View]  HMGN4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000182952 [Gene_View]  chr6:26538572-26547164 [Contig_View]  HMGN4 [Vega]
ICGC DataPortalENSG00000182952
TCGA cBioPortalHMGN4
AceView (NCBI)HMGN4
Genatlas (Paris)HMGN4
WikiGenes10473
SOURCE (Princeton)HMGN4
Genetics Home Reference (NIH)HMGN4
Genomic and cartography
GoldenPath hg19 (UCSC)HMGN4  -     chr6:26538572-26547164 +  6p22.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HMGN4  -     6p22.2   [Description]    (hg38-Dec_2013)
EnsemblHMGN4 - 6p22.2 [CytoView hg19]  HMGN4 - 6p22.2 [CytoView hg38]
Mapping of homologs : NCBIHMGN4 [Mapview hg19]  HMGN4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311841 AU143224 BC001282 BC035998 BT009824
RefSeq transcript (Entrez)NM_006353
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_007592 NW_004929326
Consensus coding sequences : CCDS (NCBI)HMGN4
Cluster EST : UnigeneHs.236774 [ NCBI ]
CGAP (NCI)Hs.236774
Alternative Splicing GalleryENSG00000182952
Gene ExpressionHMGN4 [ NCBI-GEO ]   HMGN4 [ EBI - ARRAY_EXPRESS ]   HMGN4 [ SEEK ]   HMGN4 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10473
GTEX Portal (Tissue expression)HMGN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00479   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00479  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00479
Splice isoforms : SwissVarO00479
PhosPhoSitePlusO00479
Domaine pattern : Prosite (Expaxy)HMG14_17 (PS00355)   
Domains : Interpro (EBI)HMGN_fam   
Domain families : Pfam (Sanger)HMG14_17 (PF01101)   
Domain families : Pfam (NCBI)pfam01101   
Domain families : Smart (EMBL)HMG17 (SM00527)  
Conserved Domain (NCBI)HMGN4
DMDM Disease mutations10473
Blocks (Seattle)HMGN4
SuperfamilyO00479
Human Protein AtlasENSG00000182952
Peptide AtlasO00479
HPRD17111
IPIIPI00220484   
Protein Interaction databases
DIP (DOE-UCLA)O00479
IntAct (EBI)O00479
FunCoupENSG00000182952
BioGRIDHMGN4
STRING (EMBL)HMGN4
ZODIACHMGN4
Ontologies - Pathways
QuickGOO00479
Ontology : AmiGOchromatin  protein binding  nucleus  nucleosomal DNA binding  
Ontology : EGO-EBIchromatin  protein binding  nucleus  nucleosomal DNA binding  
NDEx NetworkHMGN4
Atlas of Cancer Signalling NetworkHMGN4
Wikipedia pathwaysHMGN4
Orthology - Evolution
OrthoDB10473
GeneTree (enSembl)ENSG00000182952
Phylogenetic Trees/Animal Genes : TreeFamHMGN4
HOVERGENO00479
HOGENOMO00479
Homologs : HomoloGeneHMGN4
Homology/Alignments : Family Browser (UCSC)HMGN4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGN4
dbVarHMGN4
ClinVarHMGN4
1000_GenomesHMGN4 
Exome Variant ServerHMGN4
ExAC (Exome Aggregation Consortium)HMGN4 (select the gene name)
Genetic variants : HAPMAP10473
Genomic Variants (DGV)HMGN4 [DGVbeta]
DECIPHER (Syndromes)6:26538572-26547164  ENSG00000182952
CONAN: Copy Number AnalysisHMGN4 
Mutations
ICGC Data PortalHMGN4 
TCGA Data PortalHMGN4 
Broad Tumor PortalHMGN4
OASIS PortalHMGN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMGN4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMGN4
DgiDB (Drug Gene Interaction Database)HMGN4
DoCM (Curated mutations)HMGN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMGN4 (select a term)
intoGenHMGN4
Cancer3DHMGN4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHMGN4
Genetic Testing Registry HMGN4
NextProtO00479 [Medical]
TSGene10473
GENETestsHMGN4
Huge Navigator HMGN4 [HugePedia]
snp3D : Map Gene to Disease10473
BioCentury BCIQHMGN4
ClinGenHMGN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10473
Chemical/Pharm GKB GenePA35090
Clinical trialHMGN4
Miscellaneous
canSAR (ICR)HMGN4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMGN4
EVEXHMGN4
GoPubMedHMGN4
iHOPHMGN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:00 CEST 2017

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