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HMGXB3 (HMG-box containing 3)

Identity

Alias (NCBI)HMGX3
SMF
HGNC (Hugo) HMGXB3
HGNC Alias symbSMF
KIAA0194
HGNC Previous nameHMGX3
HGNC Previous nameHMG box domain containing 3
LocusID (NCBI) 22993
Atlas_Id 54364
Location 5q32  [Link to chromosome band 5q32]
Location_base_pair Starts at 150000739 and ends at 150053128 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
HMGXB3 (5q32) / CAPN1 (11q13.1)KNDC1 (10q26.3) / HMGXB3 (5q32)HMGXB3 5q32 / CAPN1 11q13.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)HMGXB3   28982
Cards
Entrez_Gene (NCBI)HMGXB3    HMG-box containing 3
AliasesHMGX3; SMF
GeneCards (Weizmann)HMGXB3
Ensembl hg19 (Hinxton)ENSG00000113716 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113716 [Gene_View]  ENSG00000113716 [Sequence]  chr5:150000739-150053128 [Contig_View]  HMGXB3 [Vega]
ICGC DataPortalENSG00000113716
TCGA cBioPortalHMGXB3
AceView (NCBI)HMGXB3
Genatlas (Paris)HMGXB3
SOURCE (Princeton)HMGXB3
Genetics Home Reference (NIH)HMGXB3
Genomic and cartography
GoldenPath hg38 (UCSC)HMGXB3  -     chr5:150000739-150053128 +  5q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMGXB3  -     5q32   [Description]    (hg19-Feb_2009)
GoldenPathHMGXB3 - 5q32 [CytoView hg19]  HMGXB3 - 5q32 [CytoView hg38]
ImmunoBaseENSG00000113716
Genome Data Viewer NCBIHMGXB3 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC005880 BC035219 BC035434 BC051025 BC063691
RefSeq transcript (Entrez)NM_001366501 NM_014983
Consensus coding sequences : CCDS (NCBI)HMGXB3
Gene ExpressionHMGXB3 [ NCBI-GEO ]   HMGXB3 [ EBI - ARRAY_EXPRESS ]   HMGXB3 [ SEEK ]   HMGXB3 [ MEM ]
Gene Expression Viewer (FireBrowse)HMGXB3 [ Firebrowse - Broad ]
GenevisibleExpression of HMGXB3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22993
GTEX Portal (Tissue expression)HMGXB3
Human Protein AtlasENSG00000113716-HMGXB3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ12766   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ12766  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ12766
PhosPhoSitePlusQ12766
Domaine pattern : Prosite (Expaxy)HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)HMG_box_dom    HMG_box_dom_sf    HMGXB3    HMGXB3_CxC4   
Domain families : Pfam (Sanger)CxC4 (PF18717)    HMG_box_2 (PF09011)   
Domain families : Pfam (NCBI)pfam18717    pfam09011   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)HMGXB3
SuperfamilyQ12766
AlphaFold pdb e-kbQ12766   
Human Protein Atlas [tissue]ENSG00000113716-HMGXB3 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q12766
IntAct (EBI)Q12766
BioGRIDHMGXB3
STRING (EMBL)HMGXB3
ZODIACHMGXB3
Ontologies - Pathways
QuickGOQ12766
Ontology : AmiGODNA binding  cellular_component  nucleus  biological_process  
Ontology : EGO-EBIDNA binding  cellular_component  nucleus  biological_process  
NDEx NetworkHMGXB3
Atlas of Cancer Signalling NetworkHMGXB3
Wikipedia pathwaysHMGXB3
Orthology - Evolution
OrthoDB22993
GeneTree (enSembl)ENSG00000113716
Phylogenetic Trees/Animal Genes : TreeFamHMGXB3
Homologs : HomoloGeneHMGXB3
Homology/Alignments : Family Browser (UCSC)HMGXB3
Gene fusions - Rearrangements
Fusion : MitelmanHMGXB3/CAPN1 [5q32/11q13.1]  
Fusion : QuiverHMGXB3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMGXB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMGXB3
dbVarHMGXB3
ClinVarHMGXB3
MonarchHMGXB3
1000_GenomesHMGXB3 
Exome Variant ServerHMGXB3
GNOMAD BrowserENSG00000113716
Varsome BrowserHMGXB3
ACMGHMGXB3 variants
VarityQ12766
Genomic Variants (DGV)HMGXB3 [DGVbeta]
DECIPHERHMGXB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMGXB3 
Mutations
ICGC Data PortalHMGXB3 
TCGA Data PortalHMGXB3 
Broad Tumor PortalHMGXB3
OASIS PortalHMGXB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMGXB3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHMGXB3
Mutations and Diseases : HGMDHMGXB3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHMGXB3
DgiDB (Drug Gene Interaction Database)HMGXB3
DoCM (Curated mutations)HMGXB3
CIViC (Clinical Interpretations of Variants in Cancer)HMGXB3
Cancer3DHMGXB3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHMGXB3
MedgenHMGXB3
Genetic Testing Registry HMGXB3
NextProtQ12766 [Medical]
GENETestsHMGXB3
Target ValidationHMGXB3
Huge Navigator HMGXB3 [HugePedia]
ClinGenHMGXB3
Clinical trials, drugs, therapy
MyCancerGenomeHMGXB3
Protein Interactions : CTDHMGXB3
Pharm GKB GenePA164720627
PharosQ12766
Clinical trialHMGXB3
Miscellaneous
canSAR (ICR)HMGXB3
HarmonizomeHMGXB3
DataMed IndexHMGXB3
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHMGXB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:37 CEST 2021

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