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HMHB1 (histocompatibility minor HB-1)

Identity

Alias_symbol (synonym)HB-1
HB-1Y
Other aliasHLA-HB1
HGNC (Hugo) HMHB1
LocusID (NCBI) 57824
Atlas_Id 40790
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 143812161 and ends at 143820719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NR3C1 (5q31.3) / HMHB1 (5q31.3)NR3C1 5q31.3 / HMHB1 5q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMHB1   29677
Cards
Entrez_Gene (NCBI)HMHB1  57824  histocompatibility minor HB-1
AliasesHB-1; HB-1Y; HLA-HB1
GeneCards (Weizmann)HMHB1
Ensembl hg19 (Hinxton)ENSG00000158497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158497 [Gene_View]  chr5:143812161-143820719 [Contig_View]  HMHB1 [Vega]
ICGC DataPortalENSG00000158497
TCGA cBioPortalHMHB1
AceView (NCBI)HMHB1
Genatlas (Paris)HMHB1
WikiGenes57824
SOURCE (Princeton)HMHB1
Genetics Home Reference (NIH)HMHB1
Genomic and cartography
GoldenPath hg38 (UCSC)HMHB1  -     chr5:143812161-143820719 +  5q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMHB1  -     5q31.3   [Description]    (hg19-Feb_2009)
EnsemblHMHB1 - 5q31.3 [CytoView hg19]  HMHB1 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIHMHB1 [Mapview hg19]  HMHB1 [Mapview hg38]
OMIM609961   
Gene and transcription
Genbank (Entrez)AF103884 BC096711 BC098145 BC098244 BC098251
RefSeq transcript (Entrez)NM_021182
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMHB1
Cluster EST : UnigeneHs.158320 [ NCBI ]
CGAP (NCI)Hs.158320
Alternative Splicing GalleryENSG00000158497
Gene ExpressionHMHB1 [ NCBI-GEO ]   HMHB1 [ EBI - ARRAY_EXPRESS ]   HMHB1 [ SEEK ]   HMHB1 [ MEM ]
Gene Expression Viewer (FireBrowse)HMHB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57824
GTEX Portal (Tissue expression)HMHB1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO97980   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO97980  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO97980
Splice isoforms : SwissVarO97980
PhosPhoSitePlusO97980
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HMHB1
DMDM Disease mutations57824
Blocks (Seattle)HMHB1
SuperfamilyO97980
Human Protein AtlasENSG00000158497
Peptide AtlasO97980
HPRD17089
IPIIPI00009606   
Protein Interaction databases
DIP (DOE-UCLA)O97980
IntAct (EBI)O97980
FunCoupENSG00000158497
BioGRIDHMHB1
STRING (EMBL)HMHB1
ZODIACHMHB1
Ontologies - Pathways
QuickGOO97980
Ontology : AmiGOadaptive immune response  
Ontology : EGO-EBIadaptive immune response  
NDEx NetworkHMHB1
Atlas of Cancer Signalling NetworkHMHB1
Wikipedia pathwaysHMHB1
Orthology - Evolution
OrthoDB57824
GeneTree (enSembl)ENSG00000158497
Phylogenetic Trees/Animal Genes : TreeFamHMHB1
HOVERGENO97980
HOGENOMO97980
Homologs : HomoloGeneHMHB1
Homology/Alignments : Family Browser (UCSC)HMHB1
Gene fusions - Rearrangements
Fusion : MitelmanNR3C1/HMHB1 [5q31.3/5q31.3]  [t(5;5)(q31;q31)]  
Fusion: TCGANR3C1 5q31.3 HMHB1 5q31.3 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMHB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMHB1
dbVarHMHB1
ClinVarHMHB1
1000_GenomesHMHB1 
Exome Variant ServerHMHB1
ExAC (Exome Aggregation Consortium)HMHB1 (select the gene name)
Genetic variants : HAPMAP57824
Genomic Variants (DGV)HMHB1 [DGVbeta]
DECIPHERHMHB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMHB1 
Mutations
ICGC Data PortalHMHB1 
TCGA Data PortalHMHB1 
Broad Tumor PortalHMHB1
OASIS PortalHMHB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMHB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMHB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMHB1
DgiDB (Drug Gene Interaction Database)HMHB1
DoCM (Curated mutations)HMHB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMHB1 (select a term)
intoGenHMHB1
Cancer3DHMHB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609961   
Orphanet
MedgenHMHB1
Genetic Testing Registry HMHB1
NextProtO97980 [Medical]
TSGene57824
GENETestsHMHB1
Huge Navigator HMHB1 [HugePedia]
snp3D : Map Gene to Disease57824
BioCentury BCIQHMHB1
ClinGenHMHB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57824
Chemical/Pharm GKB GenePA147357973
Clinical trialHMHB1
Miscellaneous
canSAR (ICR)HMHB1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMHB1
EVEXHMHB1
GoPubMedHMHB1
iHOPHMHB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:19:07 CEST 2017

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