Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HMMR (hyaluronan mediated motility receptor)

Identity

Alias_nameshyaluronan-mediated motility receptor (RHAMM)
hyaluronan-mediated motility receptor
Alias_symbol (synonym)RHAMM
CD168
Other aliasIHABP
HGNC (Hugo) HMMR
LocusID (NCBI) 3161
Atlas_Id 40837
Location 5q34  [Link to chromosome band 5q34]
Location_base_pair Starts at 163460511 and ends at 163491946 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MAT2B (5q34) / HMMR (5q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Hereditary breast cancer


External links

Nomenclature
HGNC (Hugo)HMMR   5012
Cards
Entrez_Gene (NCBI)HMMR  3161  hyaluronan mediated motility receptor
AliasesCD168; IHABP; RHAMM
GeneCards (Weizmann)HMMR
Ensembl hg19 (Hinxton)ENSG00000072571 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000072571 [Gene_View]  chr5:163460511-163491946 [Contig_View]  HMMR [Vega]
ICGC DataPortalENSG00000072571
TCGA cBioPortalHMMR
AceView (NCBI)HMMR
Genatlas (Paris)HMMR
WikiGenes3161
SOURCE (Princeton)HMMR
Genetics Home Reference (NIH)HMMR
Genomic and cartography
GoldenPath hg38 (UCSC)HMMR  -     chr5:163460511-163491946 +  5q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMMR  -     5q34   [Description]    (hg19-Feb_2009)
EnsemblHMMR - 5q34 [CytoView hg19]  HMMR - 5q34 [CytoView hg38]
Mapping of homologs : NCBIHMMR [Mapview hg19]  HMMR [Mapview hg38]
OMIM114480   600936   
Gene and transcription
Genbank (Entrez)AF032862 AK290577 AK302975 AK303616 AK313603
RefSeq transcript (Entrez)NM_001142556 NM_001142557 NM_012484 NM_012485
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMMR
Cluster EST : UnigeneHs.740467 [ NCBI ]
CGAP (NCI)Hs.740467
Alternative Splicing GalleryENSG00000072571
Gene ExpressionHMMR [ NCBI-GEO ]   HMMR [ EBI - ARRAY_EXPRESS ]   HMMR [ SEEK ]   HMMR [ MEM ]
Gene Expression Viewer (FireBrowse)HMMR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3161
GTEX Portal (Tissue expression)HMMR
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75330   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75330  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75330
Splice isoforms : SwissVarO75330
PhosPhoSitePlusO75330
Domains : Interpro (EBI)HMMR_C    HMMR_N    IHABP   
Domain families : Pfam (Sanger)HMMR_C (PF15908)    HMMR_N (PF15905)   
Domain families : Pfam (NCBI)pfam15908    pfam15905   
Conserved Domain (NCBI)HMMR
DMDM Disease mutations3161
Blocks (Seattle)HMMR
SuperfamilyO75330
Human Protein AtlasENSG00000072571
Peptide AtlasO75330
HPRD02963
IPIIPI00337325   IPI00844515   IPI00337772   IPI00917607   IPI00941941   IPI00983801   IPI00973125   IPI00983024   
Protein Interaction databases
DIP (DOE-UCLA)O75330
IntAct (EBI)O75330
FunCoupENSG00000072571
BioGRIDHMMR
STRING (EMBL)HMMR
ZODIACHMMR
Ontologies - Pathways
QuickGOO75330
Ontology : AmiGOG2/M transition of mitotic cell cycle  protein binding  hyaluronic acid binding  cytosol  plasma membrane  cell surface  membrane  hyaluronan catabolic process  
Ontology : EGO-EBIG2/M transition of mitotic cell cycle  protein binding  hyaluronic acid binding  cytosol  plasma membrane  cell surface  membrane  hyaluronan catabolic process  
Pathways : KEGGECM-receptor interaction   
NDEx NetworkHMMR
Atlas of Cancer Signalling NetworkHMMR
Wikipedia pathwaysHMMR
Orthology - Evolution
OrthoDB3161
GeneTree (enSembl)ENSG00000072571
Phylogenetic Trees/Animal Genes : TreeFamHMMR
HOVERGENO75330
HOGENOMO75330
Homologs : HomoloGeneHMMR
Homology/Alignments : Family Browser (UCSC)HMMR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMMR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMMR
dbVarHMMR
ClinVarHMMR
1000_GenomesHMMR 
Exome Variant ServerHMMR
ExAC (Exome Aggregation Consortium)HMMR (select the gene name)
Genetic variants : HAPMAP3161
Genomic Variants (DGV)HMMR [DGVbeta]
DECIPHERHMMR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMMR 
Mutations
ICGC Data PortalHMMR 
TCGA Data PortalHMMR 
Broad Tumor PortalHMMR
OASIS PortalHMMR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMMR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMMR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMMR
DgiDB (Drug Gene Interaction Database)HMMR
DoCM (Curated mutations)HMMR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMMR (select a term)
intoGenHMMR
Cancer3DHMMR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM114480    600936   
Orphanet
MedgenHMMR
Genetic Testing Registry HMMR
NextProtO75330 [Medical]
TSGene3161
GENETestsHMMR
Target ValidationHMMR
Huge Navigator HMMR [HugePedia]
snp3D : Map Gene to Disease3161
BioCentury BCIQHMMR
ClinGenHMMR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3161
Chemical/Pharm GKB GenePA29340
Clinical trialHMMR
Miscellaneous
canSAR (ICR)HMMR (select the gene name)
Probes
Litterature
PubMed84 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMMR
EVEXHMMR
GoPubMedHMMR
iHOPHMMR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:11:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.