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HMP19 (HMP19 protein)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 51617
Atlas_Id 64353
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 173472607 and ends at 173536182 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HMP19  51617  HMP19 protein
Aliases
GeneCards (Weizmann)HMP19
Ensembl hg19 (Hinxton)ENSG00000170091 [Gene_View]  chr5:173472607-173536182 [Contig_View]  HMP19 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170091 [Gene_View]  chr5:173472607-173536182 [Contig_View]  HMP19 [Vega]
ICGC DataPortalENSG00000170091
TCGA cBioPortalHMP19
AceView (NCBI)HMP19
Genatlas (Paris)HMP19
WikiGenes51617
SOURCE (Princeton)HMP19
Genetics Home Reference (NIH)HMP19
Genomic and cartography
GoldenPath hg19 (UCSC)HMP19  -     chr5:173472607-173536182 +  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HMP19  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblHMP19 - 5q35.2 [CytoView hg19]  HMP19 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIHMP19 [Mapview hg19]  HMP19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF113537 AF123767 AF133422 AK098398 AK294383
RefSeq transcript (Entrez)NM_015980
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)HMP19
Cluster EST : UnigeneHs.559412 [ NCBI ]
CGAP (NCI)Hs.559412
Alternative Splicing GalleryENSG00000170091
Gene ExpressionHMP19 [ NCBI-GEO ]   HMP19 [ EBI - ARRAY_EXPRESS ]   HMP19 [ SEEK ]   HMP19 [ MEM ]
Gene Expression Viewer (FireBrowse)HMP19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51617
GTEX Portal (Tissue expression)HMP19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y328   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y328  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y328
Splice isoforms : SwissVarQ9Y328
PhosPhoSitePlusQ9Y328
Domains : Interpro (EBI)Calcyon_neuron-sp   
Domain families : Pfam (Sanger)Calcyon (PF06387)   
Domain families : Pfam (NCBI)pfam06387   
Conserved Domain (NCBI)HMP19
DMDM Disease mutations51617
Blocks (Seattle)HMP19
SuperfamilyQ9Y328
Human Protein AtlasENSG00000170091
Peptide AtlasQ9Y328
HPRD13664
IPIIPI00006470   IPI00973789   IPI00980744   IPI00981454   IPI00984904   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y328
IntAct (EBI)Q9Y328
FunCoupENSG00000170091
BioGRIDHMP19
STRING (EMBL)HMP19
ZODIACHMP19
Ontologies - Pathways
QuickGOQ9Y328
Ontology : AmiGOdopamine receptor signaling pathway  integral component of membrane  cytoplasmic vesicle membrane  clathrin light chain binding  Golgi cisterna membrane  multivesicular body membrane  clathrin coat assembly  
Ontology : EGO-EBIdopamine receptor signaling pathway  integral component of membrane  cytoplasmic vesicle membrane  clathrin light chain binding  Golgi cisterna membrane  multivesicular body membrane  clathrin coat assembly  
NDEx NetworkHMP19
Atlas of Cancer Signalling NetworkHMP19
Wikipedia pathwaysHMP19
Orthology - Evolution
OrthoDB51617
GeneTree (enSembl)ENSG00000170091
Phylogenetic Trees/Animal Genes : TreeFam-
HOVERGENQ9Y328
HOGENOMQ9Y328
Homologs : HomoloGeneHMP19
Homology/Alignments : Family Browser (UCSC)HMP19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMP19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMP19
dbVarHMP19
ClinVarHMP19
1000_GenomesHMP19 
Exome Variant ServerHMP19
ExAC (Exome Aggregation Consortium)HMP19 (select the gene name)
Genetic variants : HAPMAP51617
Genomic Variants (DGV)HMP19 [DGVbeta]
DECIPHER (Syndromes)5:173472607-173536182  ENSG00000170091
CONAN: Copy Number AnalysisHMP19 
Mutations
ICGC Data Portal- 
TCGA Data Portal- 
Broad Tumor Portal-
OASIS Portal- [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMP19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMD-
BioMutasearch HMP19
DgiDB (Drug Gene Interaction Database)HMP19
DoCM (Curated mutations)HMP19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMP19 (select a term)
intoGenHMP19
Cancer3DHMP19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHMP19
Genetic Testing Registry HMP19
NextProtQ9Y328 [Medical]
TSGene51617
GENETestsHMP19
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease51617
BioCentury BCIQHMP19
ClinGenHMP19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51617
Clinical trialHMP19
Miscellaneous
canSAR (ICR)HMP19 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMP19
EVEXHMP19
GoPubMedHMP19
iHOPHMP19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:07:59 CET 2017

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