Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HMX1 (H6 family homeobox 1)

Identity

Alias_nameshomeo box (H6 family) 1
Alias_symbol (synonym)H6
NKX5-3
Other alias
HGNC (Hugo) HMX1
LocusID (NCBI) 3166
Atlas_Id 64355
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 8846076 and ends at 8871817 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HMX1   5017
Cards
Entrez_Gene (NCBI)HMX1  3166  H6 family homeobox 1
AliasesH6; NKX5-3
GeneCards (Weizmann)HMX1
Ensembl hg19 (Hinxton)ENSG00000215612 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215612 [Gene_View]  chr4:8846076-8871817 [Contig_View]  HMX1 [Vega]
ICGC DataPortalENSG00000215612
TCGA cBioPortalHMX1
AceView (NCBI)HMX1
Genatlas (Paris)HMX1
WikiGenes3166
SOURCE (Princeton)HMX1
Genetics Home Reference (NIH)HMX1
Genomic and cartography
GoldenPath hg38 (UCSC)HMX1  -     chr4:8846076-8871817 -  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HMX1  -     4p16.1   [Description]    (hg19-Feb_2009)
EnsemblHMX1 - 4p16.1 [CytoView hg19]  HMX1 - 4p16.1 [CytoView hg38]
Mapping of homologs : NCBIHMX1 [Mapview hg19]  HMX1 [Mapview hg38]
OMIM142992   612109   
Gene and transcription
Genbank (Entrez)AB593128 BC160031 BM701514 CK299519 M99587
RefSeq transcript (Entrez)NM_001306142 NM_018942
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HMX1
Cluster EST : UnigeneHs.104134 [ NCBI ]
CGAP (NCI)Hs.104134
Alternative Splicing GalleryENSG00000215612
Gene ExpressionHMX1 [ NCBI-GEO ]   HMX1 [ EBI - ARRAY_EXPRESS ]   HMX1 [ SEEK ]   HMX1 [ MEM ]
Gene Expression Viewer (FireBrowse)HMX1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3166
GTEX Portal (Tissue expression)HMX1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NP08   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NP08  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NP08
Splice isoforms : SwissVarQ9NP08
PhosPhoSitePlusQ9NP08
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom    Homeobox_metazoa   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)HMX1
DMDM Disease mutations3166
Blocks (Seattle)HMX1
SuperfamilyQ9NP08
Human Protein AtlasENSG00000215612
Peptide AtlasQ9NP08
HPRD00873
IPIIPI00004379   IPI01017998   
Protein Interaction databases
DIP (DOE-UCLA)Q9NP08
IntAct (EBI)Q9NP08
FunCoupENSG00000215612
BioGRIDHMX1
STRING (EMBL)HMX1
ZODIACHMX1
Ontologies - Pathways
QuickGOQ9NP08
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  DNA binding  nucleus  transcription, DNA-templated  multicellular organism development  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  DNA binding  nucleus  transcription, DNA-templated  multicellular organism development  negative regulation of transcription, DNA-templated  
NDEx NetworkHMX1
Atlas of Cancer Signalling NetworkHMX1
Wikipedia pathwaysHMX1
Orthology - Evolution
OrthoDB3166
GeneTree (enSembl)ENSG00000215612
Phylogenetic Trees/Animal Genes : TreeFamHMX1
HOVERGENQ9NP08
HOGENOMQ9NP08
Homologs : HomoloGeneHMX1
Homology/Alignments : Family Browser (UCSC)HMX1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHMX1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HMX1
dbVarHMX1
ClinVarHMX1
1000_GenomesHMX1 
Exome Variant ServerHMX1
ExAC (Exome Aggregation Consortium)HMX1 (select the gene name)
Genetic variants : HAPMAP3166
Genomic Variants (DGV)HMX1 [DGVbeta]
DECIPHERHMX1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHMX1 
Mutations
ICGC Data PortalHMX1 
TCGA Data PortalHMX1 
Broad Tumor PortalHMX1
OASIS PortalHMX1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHMX1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHMX1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HMX1
DgiDB (Drug Gene Interaction Database)HMX1
DoCM (Curated mutations)HMX1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HMX1 (select a term)
intoGenHMX1
Cancer3DHMX1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM142992    612109   
Orphanet17163   
MedgenHMX1
Genetic Testing Registry HMX1
NextProtQ9NP08 [Medical]
TSGene3166
GENETestsHMX1
Target ValidationHMX1
Huge Navigator HMX1 [HugePedia]
snp3D : Map Gene to Disease3166
BioCentury BCIQHMX1
ClinGenHMX1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3166
Chemical/Pharm GKB GenePA29344
Clinical trialHMX1
Miscellaneous
canSAR (ICR)HMX1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHMX1
EVEXHMX1
GoPubMedHMX1
iHOPHMX1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:38 CEST 2017

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