| Nomenclature |
HGNC (Hugo) | HMX2 5018 |
| Cards |
Entrez_Gene (NCBI) | HMX2 H6 family homeobox 2 |
Aliases | H6L; Nkx5-2 |
GeneCards (Weizmann) | HMX2 |
Ensembl hg19 (Hinxton) | ENSG00000188816 [Gene_View] |
Ensembl hg38 (Hinxton) | ENSG00000188816 [Gene_View]  ENSG00000188816 [Sequence] chr10:123148122-123150672 [Contig_View] HMX2 [Vega] |
ICGC DataPortal | ENSG00000188816 |
TCGA cBioPortal | HMX2 |
AceView (NCBI) | HMX2 |
Genatlas (Paris) | HMX2 |
SOURCE (Princeton) | HMX2 |
Genetics Home Reference (NIH) | HMX2 |
| Genomic and cartography |
GoldenPath hg38 (UCSC) | HMX2 - chr10:123148122-123150672 + 10q26.13 [Description] (hg38-Dec_2013) |
GoldenPath hg19 (UCSC) | HMX2 - 10q26.13 [Description] (hg19-Feb_2009) |
GoldenPath | HMX2 - 10q26.13 [CytoView hg19] HMX2 - 10q26.13 [CytoView hg38] |
ImmunoBase | ENSG00000188816 |
genome Data Viewer NCBI | HMX2 [Mapview hg19] |
OMIM | 600647 |
| Gene and transcription |
Genbank (Entrez) | BC132758 BC137139 BQ929484 |
RefSeq transcript (Entrez) | NM_005519 |
RefSeq genomic (Entrez) | |
Consensus coding sequences : CCDS (NCBI) | HMX2 |
Alternative Splicing Gallery | ENSG00000188816 |
Gene Expression | HMX2 [ NCBI-GEO ] HMX2 [ EBI - ARRAY_EXPRESS ]
HMX2 [ SEEK ] HMX2 [ MEM ] |
Gene Expression Viewer (FireBrowse) | HMX2 [ Firebrowse - Broad ] |
Genevisible | Expression of HMX2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]   |
BioGPS (Tissue expression) | 3167 |
GTEX Portal (Tissue expression) | HMX2 |
Human Protein Atlas | ENSG00000188816-HMX2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
UniProt/SwissProt | A2RU54 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
NextProt | A2RU54 [Sequence] [Exons] [Medical] [Publications] |
With graphics : InterPro | A2RU54 |
Splice isoforms : SwissVar | A2RU54 |
PhosPhoSitePlus | A2RU54 |
Domaine pattern : Prosite (Expaxy) | HOMEOBOX_1 (PS00027) HOMEOBOX_2 (PS50071) |
Domains : Interpro (EBI) | Homeobox-like_sf Homeobox_CS Homeobox_dom Homeobox_metazoa |
Domain families : Pfam (Sanger) | Homeodomain (PF00046) |
Domain families : Pfam (NCBI) | pfam00046 |
Domain families : Smart (EMBL) | HOX (SM00389) |
Conserved Domain (NCBI) | HMX2 |
Blocks (Seattle) | HMX2 |
Superfamily | A2RU54 |
Human Protein Atlas [tissue] | ENSG00000188816-HMX2 [tissue] |
Peptide Atlas | A2RU54 |
HPRD | 18780 |
IPI | IPI00398900 |
| Protein Interaction databases |
DIP (DOE-UCLA) | A2RU54 |
IntAct (EBI) | A2RU54 |
BioGRID | HMX2 |
STRING (EMBL) | HMX2 |
ZODIAC | HMX2 |
| Ontologies - Pathways |
QuickGO | A2RU54 |
Ontology : AmiGO | nuclear chromatin DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific regulation of transcription by RNA polymerase II brain development positive regulation of cell proliferation cell differentiation inner ear morphogenesis sequence-specific DNA binding positive regulation of mRNA splicing, via spliceosome |
Ontology : EGO-EBI | nuclear chromatin DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific regulation of transcription by RNA polymerase II brain development positive regulation of cell proliferation cell differentiation inner ear morphogenesis sequence-specific DNA binding positive regulation of mRNA splicing, via spliceosome |
NDEx Network | HMX2 |
Atlas of Cancer Signalling Network | HMX2 |
Wikipedia pathways | HMX2 |
| Orthology - Evolution |
OrthoDB | 3167 |
GeneTree (enSembl) | ENSG00000188816 |
Phylogenetic Trees/Animal Genes : TreeFam | HMX2 |
HOGENOM | A2RU54 |
Homologs : HomoloGene | HMX2 |
Homology/Alignments : Family Browser (UCSC) | HMX2 |
| Gene fusions - Rearrangements |
Fusion : Quiver | HMX2 |
| Polymorphisms : SNP and Copy number variants |
NCBI Variation Viewer | HMX2 [hg38] |
dbVar | HMX2 |
ClinVar | HMX2 |
Monarch | HMX2 |
1000_Genomes | HMX2 |
Exome Variant Server | HMX2 |
GNOMAD Browser | ENSG00000188816 |
Varsome Browser | HMX2 |
Genomic Variants (DGV) | HMX2 [DGVbeta] |
DECIPHER | HMX2 [patients] [syndromes] [variants] [genes] |
CONAN: Copy Number Analysis | HMX2 |
| Mutations |
ICGC Data Portal | HMX2 |
TCGA Data Portal | HMX2 |
Broad Tumor Portal | HMX2 |
OASIS Portal | HMX2 [ Somatic mutations - Copy number] |
Somatic Mutations in Cancer : COSMIC | HMX2 [overview] [genome browser] [tissue] [distribution] |
Somatic Mutations in Cancer : COSMIC3D | HMX2 |
Mutations and Diseases : HGMD | HMX2 |
LOVD (Leiden Open Variation Database) | Whole genome datasets |
LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
BioMuta | search HMX2 |
DgiDB (Drug Gene Interaction Database) | HMX2 |
DoCM (Curated mutations) | HMX2 (select the gene name) |
CIViC (Clinical Interpretations of Variants in Cancer) | HMX2 (select a term) |
intoGen | HMX2 |
Cancer3D | HMX2(select the gene name) |
Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
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OMIM | 600647 |
Orphanet | |
DisGeNET | HMX2 |
Medgen | HMX2 |
Genetic Testing Registry | HMX2
|
NextProt | A2RU54 [Medical] |
GENETests | HMX2 |
Target Validation | HMX2 |
Huge Navigator |
HMX2 [HugePedia] |
ClinGen | HMX2 |
| Clinical trials, drugs, therapy |
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MyCancerGenome | HMX2 |
Protein Interactions : CTD | |
Pharm GKB Gene | PA29345 |
Pharos | A2RU54 |
Clinical trial | HMX2 |
| Miscellaneous |
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canSAR (ICR) | HMX2 (select the gene name) |
Harmonizome | HMX2 |
DataMed Index | HMX2 |
| Probes |
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| Litterature |
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PubMed | 7 Pubmed reference(s) in Entrez |
GeneRIFs | Gene References Into Functions (Entrez) |
EVEX | HMX2 |