Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HN1 (hematological and neurological expressed 1)

Identity

Alias_symbol (synonym)ARM2
HN1A
Other alias
HGNC (Hugo) HN1
LocusID (NCBI) 51155
Atlas_Id 51372
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 73131338 and ends at 73150778 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARMC7 (17q25.1) / HN1 (17q25.1)HN1 (17q25.1) / CALM1 (14q32.11)HN1 (17q25.1) / GGA3 (17q25.1)
HN1 (17q25.1) / HN1 (17q25.1)HN1 (17q25.1) / PATZ1 (22q12.2)HN1 (17q25.1) / RFX7 (15q21.3)
HN1 (17q25.1) / USH1G (17q25.1)HN1 17q25.1 / USH1G 17q25.1ARMC7 17q25.1 / HN1 17q25.1
HN1 17q25.1 / GGA3 17q25.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HN1   14569
Cards
Entrez_Gene (NCBI)HN1  51155  hematological and neurological expressed 1
AliasesARM2; HN1A
GeneCards (Weizmann)HN1
Ensembl hg19 (Hinxton)ENSG00000189159 [Gene_View]  chr17:73131338-73150778 [Contig_View]  HN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000189159 [Gene_View]  chr17:73131338-73150778 [Contig_View]  HN1 [Vega]
ICGC DataPortalENSG00000189159
TCGA cBioPortalHN1
AceView (NCBI)HN1
Genatlas (Paris)HN1
WikiGenes51155
SOURCE (Princeton)HN1
Genetics Home Reference (NIH)HN1
Genomic and cartography
GoldenPath hg19 (UCSC)HN1  -     chr17:73131338-73150778 -  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HN1  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblHN1 - 17q25.1 [CytoView hg19]  HN1 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIHN1 [Mapview hg19]  HN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF060925 AF086910 AF177862 AF266846 AK223321
RefSeq transcript (Entrez)NM_001002032 NM_001002033 NM_001288609 NM_001288610 NM_001288611 NM_016185
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)HN1
Cluster EST : UnigeneHs.532803 [ NCBI ]
CGAP (NCI)Hs.532803
Alternative Splicing GalleryENSG00000189159
Gene ExpressionHN1 [ NCBI-GEO ]   HN1 [ EBI - ARRAY_EXPRESS ]   HN1 [ SEEK ]   HN1 [ MEM ]
Gene Expression Viewer (FireBrowse)HN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51155
GTEX Portal (Tissue expression)HN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UK76   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UK76  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UK76
Splice isoforms : SwissVarQ9UK76
PhosPhoSitePlusQ9UK76
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HN1
DMDM Disease mutations51155
Blocks (Seattle)HN1
SuperfamilyQ9UK76
Human Protein AtlasENSG00000189159
Peptide AtlasQ9UK76
HPRD13665
IPIIPI00007764   IPI00384857   IPI00447316   IPI01016073   IPI00385961   IPI00916337   IPI00917313   
Protein Interaction databases
DIP (DOE-UCLA)Q9UK76
IntAct (EBI)Q9UK76
FunCoupENSG00000189159
BioGRIDHN1
STRING (EMBL)HN1
ZODIACHN1
Ontologies - Pathways
QuickGOQ9UK76
Ontology : AmiGOnucleus  nucleolus  nuclear membrane  
Ontology : EGO-EBInucleus  nucleolus  nuclear membrane  
NDEx NetworkHN1
Atlas of Cancer Signalling NetworkHN1
Wikipedia pathwaysHN1
Orthology - Evolution
OrthoDB51155
GeneTree (enSembl)ENSG00000189159
Phylogenetic Trees/Animal Genes : TreeFamHN1
HOVERGENQ9UK76
HOGENOMQ9UK76
Homologs : HomoloGeneHN1
Homology/Alignments : Family Browser (UCSC)HN1
Gene fusions - Rearrangements
Fusion : MitelmanARMC7/HN1 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanHN1/CALM1 [17q25.1/14q32.11]  [t(14;17)(q32;q25)]  
Fusion : MitelmanHN1/GGA3 [17q25.1/17q25.1]  [t(17;17)(q25;q25)]  
Fusion : MitelmanHN1/USH1G [17q25.1/17q25.1]  [del(17)(q25)]  [del(17)(q25q25)]  
Fusion: TCGAARMC7 17q25.1 HN1 17q25.1 LUSC
Fusion: TCGAHN1 17q25.1 GGA3 17q25.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HN1
dbVarHN1
ClinVarHN1
1000_GenomesHN1 
Exome Variant ServerHN1
ExAC (Exome Aggregation Consortium)HN1 (select the gene name)
Genetic variants : HAPMAP51155
Genomic Variants (DGV)HN1 [DGVbeta]
DECIPHER (Syndromes)17:73131338-73150778  ENSG00000189159
CONAN: Copy Number AnalysisHN1 
Mutations
ICGC Data PortalHN1 
TCGA Data PortalHN1 
Broad Tumor PortalHN1
OASIS PortalHN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HN1
DgiDB (Drug Gene Interaction Database)HN1
DoCM (Curated mutations)HN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HN1 (select a term)
intoGenHN1
Cancer3DHN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHN1
Genetic Testing Registry HN1
NextProtQ9UK76 [Medical]
TSGene51155
GENETestsHN1
Huge Navigator HN1 [HugePedia]
snp3D : Map Gene to Disease51155
BioCentury BCIQHN1
ClinGenHN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51155
Chemical/Pharm GKB GenePA29347
Clinical trialHN1
Miscellaneous
canSAR (ICR)HN1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHN1
EVEXHN1
GoPubMedHN1
iHOPHN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:09:23 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.