Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HN1L (hematological and neurological expressed 1-like)

Identity

Alias_namesC16orf34
chromosome 16 open reading frame 34
hematological and neurological expressed 1-like
Alias_symbol (synonym)FLJ13092
L11
KIAA1426
Other alias
HGNC (Hugo) HN1L
LocusID (NCBI) 90861
Atlas_Id 64358
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1728278 and ends at 1752073 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HN1L (16p13.3) / FMR1 (Xq27.3)HN1L (16p13.3) / HN1L (16p13.3)HN1L (16p13.3) / SERPINH1 (11q13.5)
MAPK8IP3 (16p13.3) / HN1L (16p13.3)RPA2 (1p35.3) / HN1L (16p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HN1L   14137
Cards
Entrez_Gene (NCBI)HN1L  90861  hematological and neurological expressed 1-like
AliasesC16orf34; L11
GeneCards (Weizmann)HN1L
Ensembl hg19 (Hinxton)ENSG00000206053 [Gene_View]  chr16:1728278-1752073 [Contig_View]  HN1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000206053 [Gene_View]  chr16:1728278-1752073 [Contig_View]  HN1L [Vega]
ICGC DataPortalENSG00000206053
TCGA cBioPortalHN1L
AceView (NCBI)HN1L
Genatlas (Paris)HN1L
WikiGenes90861
SOURCE (Princeton)HN1L
Genetics Home Reference (NIH)HN1L
Genomic and cartography
GoldenPath hg19 (UCSC)HN1L  -     chr16:1728278-1752073 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HN1L  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblHN1L - 16p13.3 [CytoView hg19]  HN1L - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIHN1L [Mapview hg19]  HN1L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023154 AK296888 AK296998 AK303927 AK304025
RefSeq transcript (Entrez)NM_144570
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)HN1L
Cluster EST : UnigeneHs.513261 [ NCBI ]
CGAP (NCI)Hs.513261
Alternative Splicing GalleryENSG00000206053
Gene ExpressionHN1L [ NCBI-GEO ]   HN1L [ EBI - ARRAY_EXPRESS ]   HN1L [ SEEK ]   HN1L [ MEM ]
Gene Expression Viewer (FireBrowse)HN1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)90861
GTEX Portal (Tissue expression)HN1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H910   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H910  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H910
Splice isoforms : SwissVarQ9H910
PhosPhoSitePlusQ9H910
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HN1L
DMDM Disease mutations90861
Blocks (Seattle)HN1L
SuperfamilyQ9H910
Human Protein AtlasENSG00000206053
Peptide AtlasQ9H910
HPRD12674
IPIIPI00027397   IPI00607796   IPI00909743   IPI00909195   
Protein Interaction databases
DIP (DOE-UCLA)Q9H910
IntAct (EBI)Q9H910
FunCoupENSG00000206053
BioGRIDHN1L
STRING (EMBL)HN1L
ZODIACHN1L
Ontologies - Pathways
QuickGOQ9H910
Ontology : AmiGOnucleus  cytoplasm  plasma membrane  
Ontology : EGO-EBInucleus  cytoplasm  plasma membrane  
NDEx NetworkHN1L
Atlas of Cancer Signalling NetworkHN1L
Wikipedia pathwaysHN1L
Orthology - Evolution
OrthoDB90861
GeneTree (enSembl)ENSG00000206053
Phylogenetic Trees/Animal Genes : TreeFamHN1L
HOVERGENQ9H910
HOGENOMQ9H910
Homologs : HomoloGeneHN1L
Homology/Alignments : Family Browser (UCSC)HN1L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHN1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HN1L
dbVarHN1L
ClinVarHN1L
1000_GenomesHN1L 
Exome Variant ServerHN1L
ExAC (Exome Aggregation Consortium)HN1L (select the gene name)
Genetic variants : HAPMAP90861
Genomic Variants (DGV)HN1L [DGVbeta]
DECIPHER (Syndromes)16:1728278-1752073  ENSG00000206053
CONAN: Copy Number AnalysisHN1L 
Mutations
ICGC Data PortalHN1L 
TCGA Data PortalHN1L 
Broad Tumor PortalHN1L
OASIS PortalHN1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHN1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHN1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HN1L
DgiDB (Drug Gene Interaction Database)HN1L
DoCM (Curated mutations)HN1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HN1L (select a term)
intoGenHN1L
Cancer3DHN1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHN1L
Genetic Testing Registry HN1L
NextProtQ9H910 [Medical]
TSGene90861
GENETestsHN1L
Huge Navigator HN1L [HugePedia]
snp3D : Map Gene to Disease90861
BioCentury BCIQHN1L
ClinGenHN1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD90861
Chemical/Pharm GKB GenePA162391043
Clinical trialHN1L
Miscellaneous
canSAR (ICR)HN1L (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHN1L
EVEXHN1L
GoPubMedHN1L
iHOPHN1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:07:59 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.