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HNCAT21 (head and neck cancer-associated transcript 21)

Identity

Other alias-
HGNC (Hugo) -
LocusID (NCBI) 100505811
Atlas_Id 55288
Location 5q23.1  [Link to chromosome band 5q23]
Location_base_pair Starts at 117618269 and ends at 117620472 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)HNCAT21  100505811  head and neck cancer-associated transcript 21
Aliases
GeneCards (Weizmann)HNCAT21
Ensembl hg19 (Hinxton)ENSG00000250427 [Gene_View]  chr5:117618269-117620472 [Contig_View]  HNCAT21 [Vega]
Ensembl hg38 (Hinxton)ENSG00000250427 [Gene_View]  chr5:117618269-117620472 [Contig_View]  HNCAT21 [Vega]
ICGC DataPortalENSG00000250427
TCGA cBioPortalHNCAT21
AceView (NCBI)HNCAT21
Genatlas (Paris)HNCAT21
WikiGenes100505811
SOURCE (Princeton)HNCAT21
Genetics Home Reference (NIH)HNCAT21
Genomic and cartography
GoldenPath hg19 (UCSC)HNCAT21  -     chr5:117618269-117620472 +  5q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HNCAT21  -     5q23.1   [Description]    (hg38-Dec_2013)
EnsemblHNCAT21 - 5q23.1 [CytoView hg19]  HNCAT21 - 5q23.1 [CytoView hg38]
Mapping of homologs : NCBIHNCAT21 [Mapview hg19]  HNCAT21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC036254 BC044609 HG498380
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)HNCAT21
Cluster EST : UnigeneHs.369776 [ NCBI ]
CGAP (NCI)Hs.369776
Alternative Splicing GalleryENSG00000250427
Gene ExpressionHNCAT21 [ NCBI-GEO ]   HNCAT21 [ EBI - ARRAY_EXPRESS ]   HNCAT21 [ SEEK ]   HNCAT21 [ MEM ]
Gene Expression Viewer (FireBrowse)HNCAT21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505811
GTEX Portal (Tissue expression)HNCAT21
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HNCAT21
DMDM Disease mutations100505811
Blocks (Seattle)HNCAT21
Human Protein AtlasENSG00000250427
Protein Interaction databases
FunCoupENSG00000250427
BioGRIDHNCAT21
STRING (EMBL)HNCAT21
ZODIACHNCAT21
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100505811
BioCentury BCIQHNCAT21
ClinGenHNCAT21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505811
Clinical trialHNCAT21
Miscellaneous
canSAR (ICR)HNCAT21 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNCAT21
EVEXHNCAT21
GoPubMedHNCAT21
iHOPHNCAT21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:01 CEST 2017

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