Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNF1A (HNF1 homeobox A)

Identity

Alias (NCBI)HNF-1A
HNF1
HNF1alpha
HNF4A
IDDM20
LFB1
MODY3
TCF-1
TCF1
HGNC (Hugo) HNF1A
HGNC Alias symbHNF1
LFB1
HNF1α
HGNC Previous nameMODY3
 TCF1
HGNC Previous nametranscription factor 1, hepatic; LF-B1, hepatic nuclear factor (HNF1), albumin proximal factor
LocusID (NCBI) 6927
Atlas_Id 470
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 120978543 and ends at 121002511 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CMKLR1 (12q23.3) / HNF1A (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Cancer prone implicated (Data extracted from papers in the Atlas) [ 1 ]
  Familial liver adenomatosis


External links

Nomenclature
HGNC (Hugo)HNF1A   11621
LRG (Locus Reference Genomic)LRG_522
Cards
Entrez_Gene (NCBI)HNF1A    HNF1 homeobox A
AliasesHNF-1A; HNF1; HNF1alpha; HNF4A; 
IDDM20; LFB1; MODY3; TCF-1; TCF1
GeneCards (Weizmann)HNF1A
Ensembl hg19 (Hinxton)ENSG00000135100 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135100 [Gene_View]  ENSG00000135100 [Sequence]  chr12:120978543-121002511 [Contig_View]  HNF1A [Vega]
ICGC DataPortalENSG00000135100
TCGA cBioPortalHNF1A
AceView (NCBI)HNF1A
Genatlas (Paris)HNF1A
SOURCE (Princeton)HNF1A
Genetics Home Reference (NIH)HNF1A
Genomic and cartography
GoldenPath hg38 (UCSC)HNF1A  -     chr12:120978543-121002511 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNF1A  -     12q24.31   [Description]    (hg19-Feb_2009)
GoldenPathHNF1A - 12q24.31 [CytoView hg19]  HNF1A - 12q24.31 [CytoView hg38]
ImmunoBaseENSG00000135100
Genome Data Viewer NCBIHNF1A [Mapview hg19]  
OMIM125853   142330   142410   144700   222100   600496   612520   
Gene and transcription
Genbank (Entrez)AK298422 AW294801 BC104908 BC104910 BC143483
RefSeq transcript (Entrez)NM_000545 NM_001306179
Consensus coding sequences : CCDS (NCBI)HNF1A
Gene ExpressionHNF1A [ NCBI-GEO ]   HNF1A [ EBI - ARRAY_EXPRESS ]   HNF1A [ SEEK ]   HNF1A [ MEM ]
Gene Expression Viewer (FireBrowse)HNF1A [ Firebrowse - Broad ]
GenevisibleExpression of HNF1A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6927
GTEX Portal (Tissue expression)HNF1A
Human Protein AtlasENSG00000135100-HNF1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)HNF1A
Human Protein Atlas [tissue]ENSG00000135100-HNF1A [tissue]
HPRD00800
Protein Interaction databases
BioGRIDHNF1A
STRING (EMBL)HNF1A
ZODIACHNF1A
Ontologies - Pathways
Litterature
PubMed479 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHNF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:12:38 CEST 2021

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