Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNF4G (hepatocyte nuclear factor 4 gamma)

Identity

Alias_symbol (synonym)NR2A2
Other aliasNR2A3
HGNC (Hugo) HNF4G
LocusID (NCBI) 3174
Atlas_Id 64361
Location 8q21.13  [Link to chromosome band 8q21]
Location_base_pair Starts at 75407670 and ends at 75566842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HNF4G (8q21.11) / AFM (4q13.3)STAG3 (7q22.1) / HNF4G (8q21.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNF4G   5026
Cards
Entrez_Gene (NCBI)HNF4G  3174  hepatocyte nuclear factor 4 gamma
AliasesNR2A2; NR2A3
GeneCards (Weizmann)HNF4G
Ensembl hg19 (Hinxton)ENSG00000164749 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164749 [Gene_View]  chr8:75407670-75566842 [Contig_View]  HNF4G [Vega]
ICGC DataPortalENSG00000164749
TCGA cBioPortalHNF4G
AceView (NCBI)HNF4G
Genatlas (Paris)HNF4G
WikiGenes3174
SOURCE (Princeton)HNF4G
Genetics Home Reference (NIH)HNF4G
Genomic and cartography
GoldenPath hg38 (UCSC)HNF4G  -     chr8:75407670-75566842 +  8q21.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNF4G  -     8q21.13   [Description]    (hg19-Feb_2009)
EnsemblHNF4G - 8q21.13 [CytoView hg19]  HNF4G - 8q21.13 [CytoView hg38]
Mapping of homologs : NCBIHNF4G [Mapview hg19]  HNF4G [Mapview hg38]
OMIM605966   
Gene and transcription
Genbank (Entrez)AB307704 AK025222 BC054009 BC105009 BC105011
RefSeq transcript (Entrez)NM_001330561 NM_004133
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNF4G
Cluster EST : UnigeneHs.241529 [ NCBI ]
CGAP (NCI)Hs.241529
Alternative Splicing GalleryENSG00000164749
Gene ExpressionHNF4G [ NCBI-GEO ]   HNF4G [ EBI - ARRAY_EXPRESS ]   HNF4G [ SEEK ]   HNF4G [ MEM ]
Gene Expression Viewer (FireBrowse)HNF4G [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3174
GTEX Portal (Tissue expression)HNF4G
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14541   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14541  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14541
Splice isoforms : SwissVarQ14541
PhosPhoSitePlusQ14541
Domaine pattern : Prosite (Expaxy)NUCLEAR_REC_DBD_1 (PS00031)    NUCLEAR_REC_DBD_2 (PS51030)   
Domains : Interpro (EBI)COUP_TF    Nucl_hrmn_rcpt_lig-bd    Nuclear_hrmn_rcpt    Znf_hrmn_rcpt    Znf_NHR/GATA   
Domain families : Pfam (Sanger)Hormone_recep (PF00104)    zf-C4 (PF00105)   
Domain families : Pfam (NCBI)pfam00104    pfam00105   
Domain families : Smart (EMBL)HOLI (SM00430)  ZnF_C4 (SM00399)  
Conserved Domain (NCBI)HNF4G
DMDM Disease mutations3174
Blocks (Seattle)HNF4G
PDB (SRS)1LV2   
PDB (PDBSum)1LV2   
PDB (IMB)1LV2   
PDB (RSDB)1LV2   
Structural Biology KnowledgeBase1LV2   
SCOP (Structural Classification of Proteins)1LV2   
CATH (Classification of proteins structures)1LV2   
SuperfamilyQ14541
Human Protein AtlasENSG00000164749
Peptide AtlasQ14541
HPRD06909
IPIIPI00291564   IPI00852837   
Protein Interaction databases
DIP (DOE-UCLA)Q14541
IntAct (EBI)Q14541
FunCoupENSG00000164749
BioGRIDHNF4G
STRING (EMBL)HNF4G
ZODIACHNF4G
Ontologies - Pathways
QuickGOQ14541
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  steroid hormone receptor activity  RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  zinc ion binding  intracellular receptor signaling pathway  steroid hormone mediated signaling pathway  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  steroid hormone receptor activity  RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding  nucleoplasm  regulation of transcription from RNA polymerase II promoter  transcription initiation from RNA polymerase II promoter  zinc ion binding  intracellular receptor signaling pathway  steroid hormone mediated signaling pathway  positive regulation of transcription from RNA polymerase II promoter  
Pathways : KEGGMaturity onset diabetes of the young   
NDEx NetworkHNF4G
Atlas of Cancer Signalling NetworkHNF4G
Wikipedia pathwaysHNF4G
Orthology - Evolution
OrthoDB3174
GeneTree (enSembl)ENSG00000164749
Phylogenetic Trees/Animal Genes : TreeFamHNF4G
HOVERGENQ14541
HOGENOMQ14541
Homologs : HomoloGeneHNF4G
Homology/Alignments : Family Browser (UCSC)HNF4G
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNF4G [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNF4G
dbVarHNF4G
ClinVarHNF4G
1000_GenomesHNF4G 
Exome Variant ServerHNF4G
ExAC (Exome Aggregation Consortium)HNF4G (select the gene name)
Genetic variants : HAPMAP3174
Genomic Variants (DGV)HNF4G [DGVbeta]
DECIPHERHNF4G [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNF4G 
Mutations
ICGC Data PortalHNF4G 
TCGA Data PortalHNF4G 
Broad Tumor PortalHNF4G
OASIS PortalHNF4G [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNF4G  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNF4G
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNF4G
DgiDB (Drug Gene Interaction Database)HNF4G
DoCM (Curated mutations)HNF4G (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNF4G (select a term)
intoGenHNF4G
Cancer3DHNF4G(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605966   
Orphanet
MedgenHNF4G
Genetic Testing Registry HNF4G
NextProtQ14541 [Medical]
TSGene3174
GENETestsHNF4G
Target ValidationHNF4G
Huge Navigator HNF4G [HugePedia]
snp3D : Map Gene to Disease3174
BioCentury BCIQHNF4G
ClinGenHNF4G
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3174
Chemical/Pharm GKB GenePA29351
Clinical trialHNF4G
Miscellaneous
canSAR (ICR)HNF4G (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNF4G
EVEXHNF4G
GoPubMedHNF4G
iHOPHNF4G
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:52:36 CEST 2017

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