Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNRNPA0 (heterogeneous nuclear ribonucleoprotein A0)

Identity

Alias_namesHNRPA0
Alias_symbol (synonym)hnRNPA0
Other alias
HGNC (Hugo) HNRNPA0
LocusID (NCBI) 10949
Atlas_Id 55713
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 137087073 and ends at 137090039 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPA0   5030
Cards
Entrez_Gene (NCBI)HNRNPA0  10949  heterogeneous nuclear ribonucleoprotein A0
AliasesHNRPA0
GeneCards (Weizmann)HNRNPA0
Ensembl hg19 (Hinxton)ENSG00000177733 [Gene_View]  chr5:137087073-137090039 [Contig_View]  HNRNPA0 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177733 [Gene_View]  chr5:137087073-137090039 [Contig_View]  HNRNPA0 [Vega]
ICGC DataPortalENSG00000177733
TCGA cBioPortalHNRNPA0
AceView (NCBI)HNRNPA0
Genatlas (Paris)HNRNPA0
WikiGenes10949
SOURCE (Princeton)HNRNPA0
Genetics Home Reference (NIH)HNRNPA0
Genomic and cartography
GoldenPath hg19 (UCSC)HNRNPA0  -     chr5:137087073-137090039 -  5q31.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HNRNPA0  -     5q31.2   [Description]    (hg38-Dec_2013)
EnsemblHNRNPA0 - 5q31.2 [CytoView hg19]  HNRNPA0 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBIHNRNPA0 [Mapview hg19]  HNRNPA0 [Mapview hg38]
OMIM609409   
Gene and transcription
Genbank (Entrez)AA081021 AA442538 BC001008 BC007271 BC009284
RefSeq transcript (Entrez)NM_006805
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)HNRNPA0
Cluster EST : UnigeneHs.645902 [ NCBI ]
CGAP (NCI)Hs.645902
Alternative Splicing GalleryENSG00000177733
Gene ExpressionHNRNPA0 [ NCBI-GEO ]   HNRNPA0 [ EBI - ARRAY_EXPRESS ]   HNRNPA0 [ SEEK ]   HNRNPA0 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPA0 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10949
GTEX Portal (Tissue expression)HNRNPA0
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13151   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13151  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13151
Splice isoforms : SwissVarQ13151
PhosPhoSitePlusQ13151
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPA0
DMDM Disease mutations10949
Blocks (Seattle)HNRNPA0
SuperfamilyQ13151
Human Protein AtlasENSG00000177733
Peptide AtlasQ13151
HPRD17112
IPIIPI00011913   
Protein Interaction databases
DIP (DOE-UCLA)Q13151
IntAct (EBI)Q13151
FunCoupENSG00000177733
BioGRIDHNRNPA0
STRING (EMBL)HNRNPA0
ZODIACHNRNPA0
Ontologies - Pathways
QuickGOQ13151
Ontology : AmiGOnucleotide binding  mRNA splicing, via spliceosome  RNA binding  nucleus  nucleoplasm  nucleoplasm  mRNA processing  inflammatory response  gene expression  AU-rich element binding  protein kinase binding  intracellular ribonucleoprotein complex  response to lipopolysaccharide  poly(A) RNA binding  3'-UTR-mediated mRNA stabilization  3'-UTR-mediated mRNA stabilization  
Ontology : EGO-EBInucleotide binding  mRNA splicing, via spliceosome  RNA binding  nucleus  nucleoplasm  nucleoplasm  mRNA processing  inflammatory response  gene expression  AU-rich element binding  protein kinase binding  intracellular ribonucleoprotein complex  response to lipopolysaccharide  poly(A) RNA binding  3'-UTR-mediated mRNA stabilization  3'-UTR-mediated mRNA stabilization  
NDEx NetworkHNRNPA0
Atlas of Cancer Signalling NetworkHNRNPA0
Wikipedia pathwaysHNRNPA0
Orthology - Evolution
OrthoDB10949
GeneTree (enSembl)ENSG00000177733
Phylogenetic Trees/Animal Genes : TreeFamHNRNPA0
HOVERGENQ13151
HOGENOMQ13151
Homologs : HomoloGeneHNRNPA0
Homology/Alignments : Family Browser (UCSC)HNRNPA0
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPA0 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPA0
dbVarHNRNPA0
ClinVarHNRNPA0
1000_GenomesHNRNPA0 
Exome Variant ServerHNRNPA0
ExAC (Exome Aggregation Consortium)HNRNPA0 (select the gene name)
Genetic variants : HAPMAP10949
Genomic Variants (DGV)HNRNPA0 [DGVbeta]
DECIPHER (Syndromes)5:137087073-137090039  ENSG00000177733
CONAN: Copy Number AnalysisHNRNPA0 
Mutations
ICGC Data PortalHNRNPA0 
TCGA Data PortalHNRNPA0 
Broad Tumor PortalHNRNPA0
OASIS PortalHNRNPA0 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPA0  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPA0
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPA0
DgiDB (Drug Gene Interaction Database)HNRNPA0
DoCM (Curated mutations)HNRNPA0 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPA0 (select a term)
intoGenHNRNPA0
Cancer3DHNRNPA0(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609409   
Orphanet
MedgenHNRNPA0
Genetic Testing Registry HNRNPA0
NextProtQ13151 [Medical]
TSGene10949
GENETestsHNRNPA0
Huge Navigator HNRNPA0 [HugePedia]
snp3D : Map Gene to Disease10949
BioCentury BCIQHNRNPA0
ClinGenHNRNPA0
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10949
Chemical/Pharm GKB GenePA162391106
Clinical trialHNRNPA0
Miscellaneous
canSAR (ICR)HNRNPA0 (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPA0
EVEXHNRNPA0
GoPubMedHNRNPA0
iHOPHNRNPA0
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:09:24 CET 2017

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