Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HNRNPA1L2 (heterogeneous nuclear ribonucleoprotein A1-like 2)

Identity

Alias_symbol (synonym)LOC144983
Other alias-
HGNC (Hugo) HNRNPA1L2
LocusID (NCBI) 144983
Atlas_Id 64363
Location 13q14.3  [Link to chromosome band 13q14]
Location_base_pair Starts at 53191605 and ends at 53217919 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPA1L2   27067
Cards
Entrez_Gene (NCBI)HNRNPA1L2  144983  heterogeneous nuclear ribonucleoprotein A1-like 2
Aliases
GeneCards (Weizmann)HNRNPA1L2
Ensembl hg19 (Hinxton) [Gene_View]  chr13:53191605-53217919 [Contig_View]  HNRNPA1L2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr13:53191605-53217919 [Contig_View]  HNRNPA1L2 [Vega]
TCGA cBioPortalHNRNPA1L2
AceView (NCBI)HNRNPA1L2
Genatlas (Paris)HNRNPA1L2
WikiGenes144983
SOURCE (Princeton)HNRNPA1L2
Genetics Home Reference (NIH)HNRNPA1L2
Genomic and cartography
GoldenPath hg19 (UCSC)HNRNPA1L2  -     chr13:53191605-53217919 +  13q14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HNRNPA1L2  -     13q14.3   [Description]    (hg38-Dec_2013)
EnsemblHNRNPA1L2 - 13q14.3 [CytoView hg19]  HNRNPA1L2 - 13q14.3 [CytoView hg38]
Mapping of homologs : NCBIHNRNPA1L2 [Mapview hg19]  HNRNPA1L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091082 AK094423 AK123081 AK123159 AK126454
RefSeq transcript (Entrez)NM_001011724 NM_001011725
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)HNRNPA1L2
Cluster EST : UnigeneHs.447506 [ NCBI ]
CGAP (NCI)Hs.447506
Gene ExpressionHNRNPA1L2 [ NCBI-GEO ]   HNRNPA1L2 [ EBI - ARRAY_EXPRESS ]   HNRNPA1L2 [ SEEK ]   HNRNPA1L2 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPA1L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144983
GTEX Portal (Tissue expression)HNRNPA1L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ32P51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ32P51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ32P51
Splice isoforms : SwissVarQ32P51
PhosPhoSitePlusQ32P51
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNPA1    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)HnRNPA1 (PF11627)    RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam11627    pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPA1L2
DMDM Disease mutations144983
Blocks (Seattle)HNRNPA1L2
SuperfamilyQ32P51
Peptide AtlasQ32P51
HPRD17300
IPIIPI00879501   
Protein Interaction databases
DIP (DOE-UCLA)Q32P51
IntAct (EBI)Q32P51
BioGRIDHNRNPA1L2
STRING (EMBL)HNRNPA1L2
ZODIACHNRNPA1L2
Ontologies - Pathways
QuickGOQ32P51
Ontology : AmiGOnucleotide binding  RNA binding  spliceosomal complex  cytoplasm  mRNA processing  RNA splicing  mRNA transport  
Ontology : EGO-EBInucleotide binding  RNA binding  spliceosomal complex  cytoplasm  mRNA processing  RNA splicing  mRNA transport  
Pathways : KEGGSpliceosome   
NDEx NetworkHNRNPA1L2
Atlas of Cancer Signalling NetworkHNRNPA1L2
Wikipedia pathwaysHNRNPA1L2
Orthology - Evolution
OrthoDB144983
Phylogenetic Trees/Animal Genes : TreeFamHNRNPA1L2
HOVERGENQ32P51
HOGENOMQ32P51
Homologs : HomoloGeneHNRNPA1L2
Homology/Alignments : Family Browser (UCSC)HNRNPA1L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPA1L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPA1L2
dbVarHNRNPA1L2
ClinVarHNRNPA1L2
1000_GenomesHNRNPA1L2 
Exome Variant ServerHNRNPA1L2
ExAC (Exome Aggregation Consortium)HNRNPA1L2 (select the gene name)
Genetic variants : HAPMAP144983
Genomic Variants (DGV)HNRNPA1L2 [DGVbeta]
DECIPHER (Syndromes)13:53191605-53217919  
CONAN: Copy Number AnalysisHNRNPA1L2 
Mutations
ICGC Data PortalHNRNPA1L2 
TCGA Data PortalHNRNPA1L2 
Broad Tumor PortalHNRNPA1L2
OASIS PortalHNRNPA1L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPA1L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPA1L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPA1L2
DgiDB (Drug Gene Interaction Database)HNRNPA1L2
DoCM (Curated mutations)HNRNPA1L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPA1L2 (select a term)
intoGenHNRNPA1L2
Cancer3DHNRNPA1L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHNRNPA1L2
Genetic Testing Registry HNRNPA1L2
NextProtQ32P51 [Medical]
TSGene144983
GENETestsHNRNPA1L2
Huge Navigator HNRNPA1L2 [HugePedia]
snp3D : Map Gene to Disease144983
BioCentury BCIQHNRNPA1L2
ClinGenHNRNPA1L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144983
Chemical/Pharm GKB GenePA164720701
Clinical trialHNRNPA1L2
Miscellaneous
canSAR (ICR)HNRNPA1L2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPA1L2
EVEXHNRNPA1L2
GoPubMedHNRNPA1L2
iHOPHNRNPA1L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:08:00 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.