Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNRNPA3 (heterogeneous nuclear ribonucleoprotein A3)

Identity

Alias_namesHNRPA3
Other alias2610510D13Rik
D10S102
FBRNP
HGNC (Hugo) HNRNPA3
LocusID (NCBI) 220988
Atlas_Id 64368
Location 2q31.2  [Link to chromosome band 2q31]
Location_base_pair Starts at 177212694 and ends at 177223959 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
EIF2S3 (Xp22.11) / HNRNPA3 (2q31.2)HNRNPA3 (2q31.2) / BCYRN1 (Xq13.1)HNRNPA3 (2q31.2) / PTPN1 (20q13.13)
JA040723 () / HNRNPA3 (2q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPA3   24941
Cards
Entrez_Gene (NCBI)HNRNPA3  220988  heterogeneous nuclear ribonucleoprotein A3
Aliases2610510D13Rik; D10S102; FBRNP; HNRPA3
GeneCards (Weizmann)HNRNPA3
Ensembl hg19 (Hinxton)ENSG00000170144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000170144 [Gene_View]  chr2:177212694-177223959 [Contig_View]  HNRNPA3 [Vega]
ICGC DataPortalENSG00000170144
TCGA cBioPortalHNRNPA3
AceView (NCBI)HNRNPA3
Genatlas (Paris)HNRNPA3
WikiGenes220988
SOURCE (Princeton)HNRNPA3
Genetics Home Reference (NIH)HNRNPA3
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPA3  -     chr2:177212694-177223959 +  2q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPA3  -     2q31.2   [Description]    (hg19-Feb_2009)
EnsemblHNRNPA3 - 2q31.2 [CytoView hg19]  HNRNPA3 - 2q31.2 [CytoView hg38]
Mapping of homologs : NCBIHNRNPA3 [Mapview hg19]  HNRNPA3 [Mapview hg38]
OMIM605372   
Gene and transcription
Genbank (Entrez)AF517524 AK293125 AK303208 AK304687 AK316434
RefSeq transcript (Entrez)NM_001330247 NM_001330248 NM_001330249 NM_001330250 NM_001330251 NM_194247
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPA3
Cluster EST : UnigeneHs.516539 [ NCBI ]
CGAP (NCI)Hs.516539
Alternative Splicing GalleryENSG00000170144
Gene ExpressionHNRNPA3 [ NCBI-GEO ]   HNRNPA3 [ EBI - ARRAY_EXPRESS ]   HNRNPA3 [ SEEK ]   HNRNPA3 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)220988
GTEX Portal (Tissue expression)HNRNPA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51991   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51991  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51991
Splice isoforms : SwissVarP51991
PhosPhoSitePlusP51991
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPA3
DMDM Disease mutations220988
Blocks (Seattle)HNRNPA3
SuperfamilyP51991
Human Protein AtlasENSG00000170144
Peptide AtlasP51991
IPIIPI00470658   
Protein Interaction databases
DIP (DOE-UCLA)P51991
IntAct (EBI)P51991
FunCoupENSG00000170144
BioGRIDHNRNPA3
STRING (EMBL)HNRNPA3
ZODIACHNRNPA3
Ontologies - Pathways
QuickGOP51991
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  gene expression  intracellular ribonucleoprotein complex  ribonucleoprotein granule  neuron projection  mRNA transport  RNA transmembrane transporter activity  catalytic step 2 spliceosome  messenger ribonucleoprotein complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytoplasm  gene expression  intracellular ribonucleoprotein complex  ribonucleoprotein granule  neuron projection  mRNA transport  RNA transmembrane transporter activity  catalytic step 2 spliceosome  messenger ribonucleoprotein complex  
Pathways : KEGGSpliceosome   
NDEx NetworkHNRNPA3
Atlas of Cancer Signalling NetworkHNRNPA3
Wikipedia pathwaysHNRNPA3
Orthology - Evolution
OrthoDB220988
GeneTree (enSembl)ENSG00000170144
Phylogenetic Trees/Animal Genes : TreeFamHNRNPA3
HOVERGENP51991
HOGENOMP51991
Homologs : HomoloGeneHNRNPA3
Homology/Alignments : Family Browser (UCSC)HNRNPA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPA3
dbVarHNRNPA3
ClinVarHNRNPA3
1000_GenomesHNRNPA3 
Exome Variant ServerHNRNPA3
ExAC (Exome Aggregation Consortium)HNRNPA3 (select the gene name)
Genetic variants : HAPMAP220988
Genomic Variants (DGV)HNRNPA3 [DGVbeta]
DECIPHERHNRNPA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPA3 
Mutations
ICGC Data PortalHNRNPA3 
TCGA Data PortalHNRNPA3 
Broad Tumor PortalHNRNPA3
OASIS PortalHNRNPA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPA3
DgiDB (Drug Gene Interaction Database)HNRNPA3
DoCM (Curated mutations)HNRNPA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPA3 (select a term)
intoGenHNRNPA3
Cancer3DHNRNPA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605372   
Orphanet
MedgenHNRNPA3
Genetic Testing Registry HNRNPA3
NextProtP51991 [Medical]
TSGene220988
GENETestsHNRNPA3
Target ValidationHNRNPA3
Huge Navigator HNRNPA3 [HugePedia]
snp3D : Map Gene to Disease220988
BioCentury BCIQHNRNPA3
ClinGenHNRNPA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD220988
Chemical/Pharm GKB GenePA162391169
Clinical trialHNRNPA3
Miscellaneous
canSAR (ICR)HNRNPA3 (select the gene name)
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPA3
EVEXHNRNPA3
GoPubMedHNRNPA3
iHOPHNRNPA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:37 CEST 2017

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