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HNRNPCL1 (heterogeneous nuclear ribonucleoprotein C-like 1)

Identity

Alias_namesHNRPCL1
Other alias
HGNC (Hugo) HNRNPCL1
LocusID (NCBI) 343069
Atlas_Id 64369
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 12847377 and ends at 12848756 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPCL1   29295
Cards
Entrez_Gene (NCBI)HNRNPCL1  343069  heterogeneous nuclear ribonucleoprotein C-like 1
AliasesHNRPCL1
GeneCards (Weizmann)HNRNPCL1
Ensembl hg19 (Hinxton)ENSG00000179172 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179172 [Gene_View]  chr1:12847377-12848756 [Contig_View]  HNRNPCL1 [Vega]
ICGC DataPortalENSG00000179172
TCGA cBioPortalHNRNPCL1
AceView (NCBI)HNRNPCL1
Genatlas (Paris)HNRNPCL1
WikiGenes343069
SOURCE (Princeton)HNRNPCL1
Genetics Home Reference (NIH)HNRNPCL1
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPCL1  -     chr1:12847377-12848756 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPCL1  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblHNRNPCL1 - 1p36.21 [CytoView hg19]  HNRNPCL1 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIHNRNPCL1 [Mapview hg19]  HNRNPCL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC002696 BC137258 BC171866 BX283835
RefSeq transcript (Entrez)NM_001013631
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPCL1
Cluster EST : UnigeneHs.502617 [ NCBI ]
CGAP (NCI)Hs.502617
Alternative Splicing GalleryENSG00000179172
Gene ExpressionHNRNPCL1 [ NCBI-GEO ]   HNRNPCL1 [ EBI - ARRAY_EXPRESS ]   HNRNPCL1 [ SEEK ]   HNRNPCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343069
GTEX Portal (Tissue expression)HNRNPCL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60812   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60812  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60812
Splice isoforms : SwissVarO60812
PhosPhoSitePlusO60812
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)hnRNP_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPCL1
DMDM Disease mutations343069
Blocks (Seattle)HNRNPCL1
SuperfamilyO60812
Human Protein AtlasENSG00000179172
Peptide AtlasO60812
HPRD15466
IPIIPI00887991   
Protein Interaction databases
DIP (DOE-UCLA)O60812
IntAct (EBI)O60812
FunCoupENSG00000179172
BioGRIDHNRNPCL1
STRING (EMBL)HNRNPCL1
ZODIACHNRNPCL1
Ontologies - Pathways
QuickGOO60812
Ontology : AmiGORNA binding  nucleus  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  nucleus  intracellular ribonucleoprotein complex  
NDEx NetworkHNRNPCL1
Atlas of Cancer Signalling NetworkHNRNPCL1
Wikipedia pathwaysHNRNPCL1
Orthology - Evolution
OrthoDB343069
GeneTree (enSembl)ENSG00000179172
Phylogenetic Trees/Animal Genes : TreeFamHNRNPCL1
HOVERGENO60812
HOGENOMO60812
Homologs : HomoloGeneHNRNPCL1
Homology/Alignments : Family Browser (UCSC)HNRNPCL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPCL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPCL1
dbVarHNRNPCL1
ClinVarHNRNPCL1
1000_GenomesHNRNPCL1 
Exome Variant ServerHNRNPCL1
ExAC (Exome Aggregation Consortium)HNRNPCL1 (select the gene name)
Genetic variants : HAPMAP343069
Genomic Variants (DGV)HNRNPCL1 [DGVbeta]
DECIPHERHNRNPCL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPCL1 
Mutations
ICGC Data PortalHNRNPCL1 
TCGA Data PortalHNRNPCL1 
Broad Tumor PortalHNRNPCL1
OASIS PortalHNRNPCL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPCL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPCL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPCL1
DgiDB (Drug Gene Interaction Database)HNRNPCL1
DoCM (Curated mutations)HNRNPCL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPCL1 (select a term)
intoGenHNRNPCL1
Cancer3DHNRNPCL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHNRNPCL1
Genetic Testing Registry HNRNPCL1
NextProtO60812 [Medical]
TSGene343069
GENETestsHNRNPCL1
Target ValidationHNRNPCL1
Huge Navigator HNRNPCL1 [HugePedia]
snp3D : Map Gene to Disease343069
BioCentury BCIQHNRNPCL1
ClinGenHNRNPCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343069
Chemical/Pharm GKB GenePA162391240
Clinical trialHNRNPCL1
Miscellaneous
canSAR (ICR)HNRNPCL1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPCL1
EVEXHNRNPCL1
GoPubMedHNRNPCL1
iHOPHNRNPCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:39 CEST 2017

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