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HNRNPCL2 (heterogeneous nuclear ribonucleoprotein C-like 2)

Identity

Alias_namesHNRNPCP5
heterogeneous nuclear ribonucleoprotein C pseudogene 5
Other alias
HGNC (Hugo) HNRNPCL2
LocusID (NCBI) 440563
Atlas_Id 64370
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13115488 and ends at 13116854 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPCL2   48813
Cards
Entrez_Gene (NCBI)HNRNPCL2  440563  heterogeneous nuclear ribonucleoprotein C-like 2
AliasesHNRNPCP5
GeneCards (Weizmann)HNRNPCL2
Ensembl hg19 (Hinxton)ENSG00000275774 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275774 [Gene_View]  chr1:13115488-13116854 [Contig_View]  HNRNPCL2 [Vega]
ICGC DataPortalENSG00000275774
TCGA cBioPortalHNRNPCL2
AceView (NCBI)HNRNPCL2
Genatlas (Paris)HNRNPCL2
WikiGenes440563
SOURCE (Princeton)HNRNPCL2
Genetics Home Reference (NIH)HNRNPCL2
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPCL2  -     chr1:13115488-13116854 -  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPCL2  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblHNRNPCL2 - 1p36.21 [CytoView hg19]  HNRNPCL2 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIHNRNPCL2 [Mapview hg19]  HNRNPCL2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC144551 BC157858 BC171863
RefSeq transcript (Entrez)NM_001136561
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)HNRNPCL2
Cluster EST : UnigeneHs.711869 [ NCBI ]
CGAP (NCI)Hs.711869
Alternative Splicing GalleryENSG00000275774
Gene ExpressionHNRNPCL2 [ NCBI-GEO ]   HNRNPCL2 [ EBI - ARRAY_EXPRESS ]   HNRNPCL2 [ SEEK ]   HNRNPCL2 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPCL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440563
GTEX Portal (Tissue expression)HNRNPCL2
Protein : pattern, domain, 3D structure
UniProt/SwissProtB2RXH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB2RXH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB2RXH8
Splice isoforms : SwissVarB2RXH8
PhosPhoSitePlusB2RXH8
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)hnRNP_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPCL2
DMDM Disease mutations440563
Blocks (Seattle)HNRNPCL2
SuperfamilyB2RXH8
Human Protein AtlasENSG00000275774
Peptide AtlasB2RXH8
IPIIPI00735540   
Protein Interaction databases
DIP (DOE-UCLA)B2RXH8
IntAct (EBI)B2RXH8
FunCoupENSG00000275774
BioGRIDHNRNPCL2
STRING (EMBL)HNRNPCL2
ZODIACHNRNPCL2
Ontologies - Pathways
QuickGOB2RXH8
Ontology : AmiGORNA binding  nucleus  intracellular ribonucleoprotein complex  
Ontology : EGO-EBIRNA binding  nucleus  intracellular ribonucleoprotein complex  
NDEx NetworkHNRNPCL2
Atlas of Cancer Signalling NetworkHNRNPCL2
Wikipedia pathwaysHNRNPCL2
Orthology - Evolution
OrthoDB440563
GeneTree (enSembl)ENSG00000275774
Phylogenetic Trees/Animal Genes : TreeFamHNRNPCL2
HOVERGENB2RXH8
HOGENOMB2RXH8
Homologs : HomoloGeneHNRNPCL2
Homology/Alignments : Family Browser (UCSC)HNRNPCL2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPCL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPCL2
dbVarHNRNPCL2
ClinVarHNRNPCL2
1000_GenomesHNRNPCL2 
Exome Variant ServerHNRNPCL2
ExAC (Exome Aggregation Consortium)HNRNPCL2 (select the gene name)
Genetic variants : HAPMAP440563
Genomic Variants (DGV)HNRNPCL2 [DGVbeta]
DECIPHERHNRNPCL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPCL2 
Mutations
ICGC Data PortalHNRNPCL2 
TCGA Data PortalHNRNPCL2 
Broad Tumor PortalHNRNPCL2
OASIS PortalHNRNPCL2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHNRNPCL2
BioMutasearch HNRNPCL2
DgiDB (Drug Gene Interaction Database)HNRNPCL2
DoCM (Curated mutations)HNRNPCL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPCL2 (select a term)
intoGenHNRNPCL2
Cancer3DHNRNPCL2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHNRNPCL2
Genetic Testing Registry HNRNPCL2
NextProtB2RXH8 [Medical]
TSGene440563
GENETestsHNRNPCL2
Target ValidationHNRNPCL2
Huge Navigator HNRNPCL2 [HugePedia]
snp3D : Map Gene to Disease440563
BioCentury BCIQHNRNPCL2
ClinGenHNRNPCL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440563
Chemical/Pharm GKB GenePA166123692
Clinical trialHNRNPCL2
Miscellaneous
canSAR (ICR)HNRNPCL2 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPCL2
EVEXHNRNPCL2
GoPubMedHNRNPCL2
iHOPHNRNPCL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:52:37 CEST 2017

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