Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

HNRNPCL3 (heterogeneous nuclear ribonucleoprotein C-like 3)

Identity

Other aliasHNRNPCL2
HGNC (Hugo) HNRNPCL3
LocusID (NCBI) 649330
Atlas_Id 64371
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13061232 and ends at 13062237 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPCL3   51235
Cards
Entrez_Gene (NCBI)HNRNPCL3  649330  heterogeneous nuclear ribonucleoprotein C-like 3
AliasesHNRNPCL2
GeneCards (Weizmann)HNRNPCL3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:13061232-13062237 [Contig_View]  HNRNPCL3 [Vega]
TCGA cBioPortalHNRNPCL3
AceView (NCBI)HNRNPCL3
Genatlas (Paris)HNRNPCL3
WikiGenes649330
SOURCE (Princeton)HNRNPCL3
Genetics Home Reference (NIH)HNRNPCL3
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPCL3  -     chr1:13061232-13062237 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPCL3  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblHNRNPCL3 - 1p36.21 [CytoView hg19]  HNRNPCL3 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIHNRNPCL3 [Mapview hg19]  HNRNPCL3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC171859 BC171865
RefSeq transcript (Entrez)NM_001146181
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPCL3
Cluster EST : UnigeneHs.502617 [ NCBI ]
CGAP (NCI)Hs.502617
Gene ExpressionHNRNPCL3 [ NCBI-GEO ]   HNRNPCL3 [ EBI - ARRAY_EXPRESS ]   HNRNPCL3 [ SEEK ]   HNRNPCL3 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPCL3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)649330
GTEX Portal (Tissue expression)HNRNPCL3
Protein : pattern, domain, 3D structure
UniProt/SwissProtB7ZW38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtB7ZW38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProB7ZW38
Splice isoforms : SwissVarB7ZW38
PhosPhoSitePlusB7ZW38
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)hnRNP_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPCL3
DMDM Disease mutations649330
Blocks (Seattle)HNRNPCL3
SuperfamilyB7ZW38
Peptide AtlasB7ZW38
Protein Interaction databases
DIP (DOE-UCLA)B7ZW38
IntAct (EBI)B7ZW38
BioGRIDHNRNPCL3
STRING (EMBL)HNRNPCL3
ZODIACHNRNPCL3
Ontologies - Pathways
QuickGOB7ZW38
Ontology : AmiGORNA binding  nucleus  
Ontology : EGO-EBIRNA binding  nucleus  
NDEx NetworkHNRNPCL3
Atlas of Cancer Signalling NetworkHNRNPCL3
Wikipedia pathwaysHNRNPCL3
Orthology - Evolution
OrthoDB649330
Phylogenetic Trees/Animal Genes : TreeFamHNRNPCL3
HOVERGENB7ZW38
HOGENOMB7ZW38
Homologs : HomoloGeneHNRNPCL3
Homology/Alignments : Family Browser (UCSC)HNRNPCL3
Gene fusions - Rearrangements
Tumor Fusion PortalHNRNPCL3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPCL3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPCL3
dbVarHNRNPCL3
ClinVarHNRNPCL3
1000_GenomesHNRNPCL3 
Exome Variant ServerHNRNPCL3
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP649330
Genomic Variants (DGV)HNRNPCL3 [DGVbeta]
DECIPHERHNRNPCL3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPCL3 
Mutations
ICGC Data PortalHNRNPCL3 
TCGA Data PortalHNRNPCL3 
Broad Tumor PortalHNRNPCL3
OASIS PortalHNRNPCL3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHNRNPCL3
BioMutasearch HNRNPCL3
DgiDB (Drug Gene Interaction Database)HNRNPCL3
DoCM (Curated mutations)HNRNPCL3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPCL3 (select a term)
intoGenHNRNPCL3
Cancer3DHNRNPCL3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETHNRNPCL3
MedgenHNRNPCL3
Genetic Testing Registry HNRNPCL3
NextProtB7ZW38 [Medical]
TSGene649330
GENETestsHNRNPCL3
Target ValidationHNRNPCL3
Huge Navigator HNRNPCL3 [HugePedia]
snp3D : Map Gene to Disease649330
BioCentury BCIQHNRNPCL3
ClinGenHNRNPCL3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD649330
Chemical/Pharm GKB GenePA166123693
Clinical trialHNRNPCL3
Miscellaneous
canSAR (ICR)HNRNPCL3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPCL3
EVEXHNRNPCL3
GoPubMedHNRNPCL3
iHOPHNRNPCL3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:00:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.