Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNRNPCL4 (heterogeneous nuclear ribonucleoprotein C-like 4)

Identity

Other alias-
HGNC (Hugo) HNRNPCL4
LocusID (NCBI) 101060301
Atlas_Id 76832
Location 1p36.21  [Link to chromosome band 1p36]
Location_base_pair Starts at 13061310 and ends at 13062237 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPCL4   51333
Cards
Entrez_Gene (NCBI)HNRNPCL4  101060301  heterogeneous nuclear ribonucleoprotein C-like 4
Aliases
GeneCards (Weizmann)HNRNPCL4
Ensembl hg19 (Hinxton)ENSG00000179412 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000179412 [Gene_View]  chr1:13061310-13062237 [Contig_View]  HNRNPCL4 [Vega]
ICGC DataPortalENSG00000179412
TCGA cBioPortalHNRNPCL4
AceView (NCBI)HNRNPCL4
Genatlas (Paris)HNRNPCL4
WikiGenes101060301
SOURCE (Princeton)HNRNPCL4
Genetics Home Reference (NIH)HNRNPCL4
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPCL4  -     chr1:13061310-13062237 +  1p36.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPCL4  -     1p36.21   [Description]    (hg19-Feb_2009)
EnsemblHNRNPCL4 - 1p36.21 [CytoView hg19]  HNRNPCL4 - 1p36.21 [CytoView hg38]
Mapping of homologs : NCBIHNRNPCL4 [Mapview hg19]  HNRNPCL4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001302551
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_187517 NW_012132914 NW_015495298
Consensus coding sequences : CCDS (NCBI)HNRNPCL4
Alternative Splicing GalleryENSG00000179412
Gene ExpressionHNRNPCL4 [ NCBI-GEO ]   HNRNPCL4 [ EBI - ARRAY_EXPRESS ]   HNRNPCL4 [ SEEK ]   HNRNPCL4 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPCL4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101060301
GTEX Portal (Tissue expression)HNRNPCL4
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DMR1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DMR1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DMR1
Splice isoforms : SwissVarP0DMR1
PhosPhoSitePlusP0DMR1
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)hnRNP_C    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPCL4
DMDM Disease mutations101060301
Blocks (Seattle)HNRNPCL4
SuperfamilyP0DMR1
Human Protein AtlasENSG00000179412
Peptide AtlasP0DMR1
Protein Interaction databases
DIP (DOE-UCLA)P0DMR1
IntAct (EBI)P0DMR1
FunCoupENSG00000179412
BioGRIDHNRNPCL4
STRING (EMBL)HNRNPCL4
ZODIACHNRNPCL4
Ontologies - Pathways
QuickGOP0DMR1
Ontology : AmiGORNA binding  nucleus  
Ontology : EGO-EBIRNA binding  nucleus  
NDEx NetworkHNRNPCL4
Atlas of Cancer Signalling NetworkHNRNPCL4
Wikipedia pathwaysHNRNPCL4
Orthology - Evolution
OrthoDB101060301
GeneTree (enSembl)ENSG00000179412
Phylogenetic Trees/Animal Genes : TreeFamHNRNPCL4
HOVERGENP0DMR1
HOGENOMP0DMR1
Homologs : HomoloGeneHNRNPCL4
Homology/Alignments : Family Browser (UCSC)HNRNPCL4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPCL4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPCL4
dbVarHNRNPCL4
ClinVarHNRNPCL4
1000_GenomesHNRNPCL4 
Exome Variant ServerHNRNPCL4
ExAC (Exome Aggregation Consortium)HNRNPCL4 (select the gene name)
Genetic variants : HAPMAP101060301
Genomic Variants (DGV)HNRNPCL4 [DGVbeta]
DECIPHERHNRNPCL4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPCL4 
Mutations
ICGC Data PortalHNRNPCL4 
TCGA Data PortalHNRNPCL4 
Broad Tumor PortalHNRNPCL4
OASIS PortalHNRNPCL4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHNRNPCL4
BioMutasearch HNRNPCL4
DgiDB (Drug Gene Interaction Database)HNRNPCL4
DoCM (Curated mutations)HNRNPCL4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPCL4 (select a term)
intoGenHNRNPCL4
Cancer3DHNRNPCL4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenHNRNPCL4
Genetic Testing Registry HNRNPCL4
NextProtP0DMR1 [Medical]
TSGene101060301
GENETestsHNRNPCL4
Target ValidationHNRNPCL4
Huge Navigator HNRNPCL4 [HugePedia]
snp3D : Map Gene to Disease101060301
BioCentury BCIQHNRNPCL4
ClinGenHNRNPCL4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101060301
Chemical/Pharm GKB GenePA166123694
Clinical trialHNRNPCL4
Miscellaneous
canSAR (ICR)HNRNPCL4 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPCL4
EVEXHNRNPCL4
GoPubMedHNRNPCL4
iHOPHNRNPCL4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:10:40 CEST 2017

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