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HNRNPDL (heterogeneous nuclear ribonucleoprotein D like)

Identity

Alias_namesHNRPDL
Alias_symbol (synonym)JKTBP
laAUF1
Other aliasHNRNP
JKTBP2
LGMD1G
HGNC (Hugo) HNRNPDL
LocusID (NCBI) 9987
Atlas_Id 56404
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 83343717 and ends at 83351378 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HNRNPDL (4q21.22) / GPR39 (2q21.2)HNRNPDL (4q21.22) / HAUS5 (19q13.12)HNRNPDL (4q21.22) / HNRNPDL (4q21.22)
HNRNPDL (4q21.22) / MIEN1 (17q12)HNRNPDL (4q21.22) / SKAP2 (7p15.2)HPRT1 (Xq26.2) / HNRNPDL (4q21.22)
MAGED2 (Xp11.21) / HNRNPDL (4q21.22)MIEN1 (17q12) / HNRNPDL (4q21.22)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPDL   5037
Cards
Entrez_Gene (NCBI)HNRNPDL  9987  heterogeneous nuclear ribonucleoprotein D like
AliasesHNRNP; HNRPDL; JKTBP; JKTBP2; 
LGMD1G; laAUF1
GeneCards (Weizmann)HNRNPDL
Ensembl hg19 (Hinxton)ENSG00000152795 [Gene_View]  chr4:83343717-83351378 [Contig_View]  HNRNPDL [Vega]
Ensembl hg38 (Hinxton)ENSG00000152795 [Gene_View]  chr4:83343717-83351378 [Contig_View]  HNRNPDL [Vega]
ICGC DataPortalENSG00000152795
TCGA cBioPortalHNRNPDL
AceView (NCBI)HNRNPDL
Genatlas (Paris)HNRNPDL
WikiGenes9987
SOURCE (Princeton)HNRNPDL
Genetics Home Reference (NIH)HNRNPDL
Genomic and cartography
GoldenPath hg19 (UCSC)HNRNPDL  -     chr4:83343717-83351378 -  4q21.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HNRNPDL  -     4q21.22   [Description]    (hg38-Dec_2013)
EnsemblHNRNPDL - 4q21.22 [CytoView hg19]  HNRNPDL - 4q21.22 [CytoView hg38]
Mapping of homologs : NCBIHNRNPDL [Mapview hg19]  HNRNPDL [Mapview hg38]
OMIM607137   609115   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001207000 NM_005463 NM_031372
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPDL
Cluster EST : UnigeneHs.707013 [ NCBI ]
CGAP (NCI)Hs.707013
Alternative Splicing GalleryENSG00000152795
Gene ExpressionHNRNPDL [ NCBI-GEO ]   HNRNPDL [ EBI - ARRAY_EXPRESS ]   HNRNPDL [ SEEK ]   HNRNPDL [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPDL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9987
GTEX Portal (Tissue expression)HNRNPDL
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14979   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14979  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14979
Splice isoforms : SwissVarO14979
PhosPhoSitePlusO14979
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPDL
DMDM Disease mutations9987
Blocks (Seattle)HNRNPDL
SuperfamilyO14979
Human Protein AtlasENSG00000152795
Peptide AtlasO14979
HPRD06185
IPIIPI00011274   IPI00845282   IPI00045498   
Protein Interaction databases
DIP (DOE-UCLA)O14979
IntAct (EBI)O14979
FunCoupENSG00000152795
BioGRIDHNRNPDL
STRING (EMBL)HNRNPDL
ZODIACHNRNPDL
Ontologies - Pathways
QuickGOO14979
Ontology : AmiGOnucleotide binding  DNA binding  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  poly(A) RNA binding  extracellular exosome  
Ontology : EGO-EBInucleotide binding  DNA binding  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  poly(A) RNA binding  extracellular exosome  
NDEx NetworkHNRNPDL
Atlas of Cancer Signalling NetworkHNRNPDL
Wikipedia pathwaysHNRNPDL
Orthology - Evolution
OrthoDB9987
GeneTree (enSembl)ENSG00000152795
Phylogenetic Trees/Animal Genes : TreeFamHNRNPDL
HOVERGENO14979
HOGENOMO14979
Homologs : HomoloGeneHNRNPDL
Homology/Alignments : Family Browser (UCSC)HNRNPDL
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPDL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPDL
dbVarHNRNPDL
ClinVarHNRNPDL
1000_GenomesHNRNPDL 
Exome Variant ServerHNRNPDL
ExAC (Exome Aggregation Consortium)HNRNPDL (select the gene name)
Genetic variants : HAPMAP9987
Genomic Variants (DGV)HNRNPDL [DGVbeta]
DECIPHER (Syndromes)4:83343717-83351378  ENSG00000152795
CONAN: Copy Number AnalysisHNRNPDL 
Mutations
ICGC Data PortalHNRNPDL 
TCGA Data PortalHNRNPDL 
Broad Tumor PortalHNRNPDL
OASIS PortalHNRNPDL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHNRNPDL
BioMutasearch HNRNPDL
DgiDB (Drug Gene Interaction Database)HNRNPDL
DoCM (Curated mutations)HNRNPDL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPDL (select a term)
intoGenHNRNPDL
Cancer3DHNRNPDL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607137    609115   
Orphanet10759   
MedgenHNRNPDL
Genetic Testing Registry HNRNPDL
NextProtO14979 [Medical]
TSGene9987
GENETestsHNRNPDL
Huge Navigator HNRNPDL [HugePedia]
snp3D : Map Gene to Disease9987
BioCentury BCIQHNRNPDL
ClinGenHNRNPDL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9987
Chemical/Pharm GKB GenePA29362
Clinical trialHNRNPDL
Miscellaneous
canSAR (ICR)HNRNPDL (select the gene name)
Probes
Litterature
PubMed65 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPDL
EVEXHNRNPDL
GoPubMedHNRNPDL
iHOPHNRNPDL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:04:03 CEST 2017

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