Atlas of Genetics and Cytogenetics in Oncology and Haematology

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HNRNPF (heterogeneous nuclear ribonucleoprotein F)

Identity

Alias_namesHNRPF
Other aliasOK/SW-cl.23
mcs94-1
HGNC (Hugo) HNRNPF
LocusID (NCBI) 3185
Atlas_Id 43592
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 43385617 and ends at 43409208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APLP2 (11q24.3) / HNRNPF (10q11.21)HNRNPF (10q11.21) / ATAD1 (10q23.31)HNRNPF (10q11.21) / HNRNPF (10q11.21)
HNRNPF (10q11.21) / NCAM2 (21q21.1)HNRNPF (10q11.21) / ZNF569 (19q13.12)SMG7 (1q25.3) / HNRNPF (10q11.21)
HNRNPF 10q11.21 / ATAD1 10q23.31HNRNPF 10q11.21 / ZNF569 19q13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(10;10)(q11;q23) HNRNPF/ATAD1
t(10;19)(q11;q13) HNRNPF/ZNF569

External links

Nomenclature
HGNC (Hugo)HNRNPF   5039
Cards
Entrez_Gene (NCBI)HNRNPF  3185  heterogeneous nuclear ribonucleoprotein F
AliasesHNRPF; OK/SW-cl.23; mcs94-1
GeneCards (Weizmann)HNRNPF
Ensembl hg19 (Hinxton)ENSG00000169813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169813 [Gene_View]  ENSG00000169813 [Sequence]  chr10:43385617-43409208 [Contig_View]  HNRNPF [Vega]
ICGC DataPortalENSG00000169813
TCGA cBioPortalHNRNPF
AceView (NCBI)HNRNPF
Genatlas (Paris)HNRNPF
WikiGenes3185
SOURCE (Princeton)HNRNPF
Genetics Home Reference (NIH)HNRNPF
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPF  -     chr10:43385617-43409208 -  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPF  -     4q21.22   [Description]    (hg19-Feb_2009)
EnsemblHNRNPF - 4q21.22 [CytoView hg19]  HNRNPF - 4q21.22 [CytoView hg38]
Mapping of homologs : NCBIHNRNPF [Mapview hg19]  HNRNPF [Mapview hg38]
OMIM601037   
Gene and transcription
Genbank (Entrez)AB062287 AI133166 AK001364 AK296696 AL542769
RefSeq transcript (Entrez)NM_001098204 NM_001098205 NM_001098206 NM_001098207 NM_001098208 NM_004966
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPF
Cluster EST : UnigeneHs.712955 [ NCBI ]
CGAP (NCI)Hs.712955
Alternative Splicing GalleryENSG00000169813
Gene ExpressionHNRNPF [ NCBI-GEO ]   HNRNPF [ EBI - ARRAY_EXPRESS ]   HNRNPF [ SEEK ]   HNRNPF [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3185
GTEX Portal (Tissue expression)HNRNPF
Human Protein AtlasENSG00000169813-HNRNPF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52597   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52597  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52597
Splice isoforms : SwissVarP52597
PhosPhoSitePlusP52597
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    Znf_CHHC   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-RNPHF (PF08080)   
Domain families : Pfam (NCBI)pfam00076    pfam08080   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPF
DMDM Disease mutations3185
Blocks (Seattle)HNRNPF
PDB (SRS)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
PDB (PDBSum)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
PDB (IMB)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
PDB (RSDB)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
Structural Biology KnowledgeBase2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
SCOP (Structural Classification of Proteins)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
CATH (Classification of proteins structures)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
SuperfamilyP52597
Human Protein Atlas [tissue]ENSG00000169813-HNRNPF [tissue]
Peptide AtlasP52597
HPRD03023
IPIIPI00003881   IPI01010852   
Protein Interaction databases
DIP (DOE-UCLA)P52597
IntAct (EBI)P52597
FunCoupENSG00000169813
BioGRIDHNRNPF
STRING (EMBL)HNRNPF
ZODIACHNRNPF
Ontologies - Pathways
QuickGOP52597
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  plasma membrane  RNA processing  fibroblast growth factor receptor signaling pathway  membrane  RNA metabolic process  TBP-class protein binding  interleukin-12-mediated signaling pathway  regulation of RNA splicing  regulation of RNA splicing  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  plasma membrane  RNA processing  fibroblast growth factor receptor signaling pathway  membrane  RNA metabolic process  TBP-class protein binding  interleukin-12-mediated signaling pathway  regulation of RNA splicing  regulation of RNA splicing  catalytic step 2 spliceosome  
NDEx NetworkHNRNPF
Atlas of Cancer Signalling NetworkHNRNPF
Wikipedia pathwaysHNRNPF
Orthology - Evolution
OrthoDB3185
GeneTree (enSembl)ENSG00000169813
Phylogenetic Trees/Animal Genes : TreeFamHNRNPF
HOVERGENP52597
HOGENOMP52597
Homologs : HomoloGeneHNRNPF
Homology/Alignments : Family Browser (UCSC)HNRNPF
Gene fusions - Rearrangements
Fusion : MitelmanHNRNPF/ATAD1 [10q11.21/10q23.31]  
Fusion : MitelmanHNRNPF/ZNF569 [10q11.21/19q13.12]  [t(10;19)(q11;q13)]  
Fusion PortalHNRNPF 10q11.21 ATAD1 10q23.31 BRCA
Fusion PortalHNRNPF 10q11.21 ZNF569 19q13.12 OV
Fusion : QuiverHNRNPF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPF
dbVarHNRNPF
ClinVarHNRNPF
1000_GenomesHNRNPF 
Exome Variant ServerHNRNPF
ExAC (Exome Aggregation Consortium)ENSG00000169813
GNOMAD BrowserENSG00000169813
Varsome BrowserHNRNPF
Genetic variants : HAPMAP3185
Genomic Variants (DGV)HNRNPF [DGVbeta]
DECIPHERHNRNPF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPF 
Mutations
ICGC Data PortalHNRNPF 
TCGA Data PortalHNRNPF 
Broad Tumor PortalHNRNPF
OASIS PortalHNRNPF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPF
DgiDB (Drug Gene Interaction Database)HNRNPF
DoCM (Curated mutations)HNRNPF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPF (select a term)
intoGenHNRNPF
Cancer3DHNRNPF(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601037   
Orphanet
DisGeNETHNRNPF
MedgenHNRNPF
Genetic Testing Registry HNRNPF
NextProtP52597 [Medical]
TSGene3185
GENETestsHNRNPF
Target ValidationHNRNPF
Huge Navigator HNRNPF [HugePedia]
snp3D : Map Gene to Disease3185
BioCentury BCIQHNRNPF
ClinGenHNRNPF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3185
Chemical/Pharm GKB GenePA162391271
Clinical trialHNRNPF
Miscellaneous
canSAR (ICR)HNRNPF (select the gene name)
Probes
Litterature
PubMed146 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPF
EVEXHNRNPF
GoPubMedHNRNPF
iHOPHNRNPF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:56:42 CEST 2018
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