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HNRNPF (heterogeneous nuclear ribonucleoprotein F)

Identity

Alias (NCBI)HNRPF
OK/SW-cl.23
mcs94-1
HGNC (Hugo) HNRNPF
HGNC Previous nameHNRPF
LocusID (NCBI) 3185
Atlas_Id 43592
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43385617 and ends at 43409208 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APLP2 (11q24.3) / HNRNPF (10q11.21)HNRNPF (10q11.21) / ATAD1 (10q23.31)HNRNPF (10q11.21) / HNRNPF (10q11.21)
HNRNPF (10q11.21) / NCAM2 (21q21.1)HNRNPF (10q11.21) / ZNF569 (19q13.12)SMG7 (1q25.3) / HNRNPF (10q11.21)
HNRNPF 10q11.21 / ATAD1 10q23.31HNRNPF 10q11.21 / ZNF569 19q13.12

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)HNRNPF   5039
Cards
Entrez_Gene (NCBI)HNRNPF    heterogeneous nuclear ribonucleoprotein F
AliasesHNRPF; OK/SW-cl.23; mcs94-1
GeneCards (Weizmann)HNRNPF
Ensembl hg19 (Hinxton)ENSG00000169813 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169813 [Gene_View]  ENSG00000169813 [Sequence]  chr10:43385617-43409208 [Contig_View]  HNRNPF [Vega]
ICGC DataPortalENSG00000169813
TCGA cBioPortalHNRNPF
AceView (NCBI)HNRNPF
Genatlas (Paris)HNRNPF
SOURCE (Princeton)HNRNPF
Genetics Home Reference (NIH)HNRNPF
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPF  -     chr10:43385617-43409208 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPF  -     10q11.21   [Description]    (hg19-Feb_2009)
GoldenPathHNRNPF - 10q11.21 [CytoView hg19]  HNRNPF - 10q11.21 [CytoView hg38]
ImmunoBaseENSG00000169813
Genome Data Viewer NCBIHNRNPF [Mapview hg19]  
OMIM601037   
Gene and transcription
Genbank (Entrez)AB062287 AI133166 AK001364 AK296696 AL542769
RefSeq transcript (Entrez)NM_001098204 NM_001098205 NM_001098206 NM_001098207 NM_001098208 NM_004966
Consensus coding sequences : CCDS (NCBI)HNRNPF
Gene ExpressionHNRNPF [ NCBI-GEO ]   HNRNPF [ EBI - ARRAY_EXPRESS ]   HNRNPF [ SEEK ]   HNRNPF [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPF [ Firebrowse - Broad ]
GenevisibleExpression of HNRNPF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3185
GTEX Portal (Tissue expression)HNRNPF
Human Protein AtlasENSG00000169813-HNRNPF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52597   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52597  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52597
PhosPhoSitePlusP52597
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    Znf_CHHC   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-RNPHF (PF08080)   
Domain families : Pfam (NCBI)pfam00076    pfam08080   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPF
PDB (RSDB)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
PDB Europe2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
PDB (PDBSum)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
PDB (IMB)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
Structural Biology KnowledgeBase2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
SCOP (Structural Classification of Proteins)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
CATH (Classification of proteins structures)2HGL    2HGM    2HGN    2KFY    2KG0    2KG1    3TFY   
SuperfamilyP52597
AlphaFold pdb e-kbP52597   
Human Protein Atlas [tissue]ENSG00000169813-HNRNPF [tissue]
HPRD03023
Protein Interaction databases
DIP (DOE-UCLA)P52597
IntAct (EBI)P52597
BioGRIDHNRNPF
STRING (EMBL)HNRNPF
ZODIACHNRNPF
Ontologies - Pathways
QuickGOP52597
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleoplasm  cytosol  plasma membrane  RNA processing  fibroblast growth factor receptor signaling pathway  membrane  RNA metabolic process  interleukin-12-mediated signaling pathway  regulation of RNA splicing  regulation of RNA splicing  regulation of RNA splicing  catalytic step 2 spliceosome  ribonucleoprotein complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  RNA binding  single-stranded RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  nucleoplasm  cytosol  plasma membrane  RNA processing  fibroblast growth factor receptor signaling pathway  membrane  RNA metabolic process  interleukin-12-mediated signaling pathway  regulation of RNA splicing  regulation of RNA splicing  regulation of RNA splicing  catalytic step 2 spliceosome  ribonucleoprotein complex  
NDEx NetworkHNRNPF
Atlas of Cancer Signalling NetworkHNRNPF
Wikipedia pathwaysHNRNPF
Orthology - Evolution
OrthoDB3185
GeneTree (enSembl)ENSG00000169813
Phylogenetic Trees/Animal Genes : TreeFamHNRNPF
Homologs : HomoloGeneHNRNPF
Homology/Alignments : Family Browser (UCSC)HNRNPF
Gene fusions - Rearrangements
Fusion : MitelmanHNRNPF/ATAD1 [10q11.21/10q23.31]  
Fusion : MitelmanHNRNPF/ZNF569 [10q11.21/19q13.12]  
Fusion : QuiverHNRNPF
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPF
dbVarHNRNPF
ClinVarHNRNPF
MonarchHNRNPF
1000_GenomesHNRNPF 
Exome Variant ServerHNRNPF
GNOMAD BrowserENSG00000169813
Varsome BrowserHNRNPF
ACMGHNRNPF variants
VarityP52597
Genomic Variants (DGV)HNRNPF [DGVbeta]
DECIPHERHNRNPF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPF 
Mutations
ICGC Data PortalHNRNPF 
TCGA Data PortalHNRNPF 
Broad Tumor PortalHNRNPF
OASIS PortalHNRNPF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPF  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DHNRNPF
Mutations and Diseases : HGMDHNRNPF
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaHNRNPF
DgiDB (Drug Gene Interaction Database)HNRNPF
DoCM (Curated mutations)HNRNPF
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPF
Cancer3DHNRNPF
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601037   
Orphanet
DisGeNETHNRNPF
MedgenHNRNPF
Genetic Testing Registry HNRNPF
NextProtP52597 [Medical]
GENETestsHNRNPF
Target ValidationHNRNPF
Huge Navigator HNRNPF [HugePedia]
ClinGenHNRNPF
Clinical trials, drugs, therapy
MyCancerGenomeHNRNPF
Protein Interactions : CTDHNRNPF
Pharm GKB GenePA162391271
PharosP52597
Clinical trialHNRNPF
Miscellaneous
canSAR (ICR)HNRNPF
HarmonizomeHNRNPF
DataMed IndexHNRNPF
Probes
Litterature
PubMed238 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXHNRNPF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:12:41 CEST 2021
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