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HNRNPH1 (heterogeneous nuclear ribonucleoprotein H1)

Identity

Alias_namesHNRPH1
Alias_symbol (synonym)hnRNPH
Other aliasHNRPH
HGNC (Hugo) HNRNPH1
LocusID (NCBI) 3187
Atlas_Id 50995
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 179614178 and ends at 179623710 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HNRNPH1 (5q35.3) / ACTN1 (14q24.1)HNRNPH1 (5q35.3) / EFHC1 (6p12.2)HNRNPH1 (5q35.3) / ERG (21q22.2)
HNRNPH1 (5q35.3) / HNRNPH1 (5q35.3)HNRNPH1 (5q35.3) / MLLT10 (10p12.31)HNRNPH1 (5q35.3) / MRPS24 (7p13)
HNRNPH1 (5q35.3) / PIK3IP1 (22q12.2)HNRNPH1 (5q35.3) / RNF130 (5q35.3)HNRNPH1 (5q35.3) / SAP130 (2q14.3)
HNRNPH1 (5q35.3) / TRAP1 (16p13.3)HNRNPH1 (5q35.3) / VAPA (18p11.22)HNRNPH1 (5q35.3) / ZNF234 (19q13.31)
NAV2 (11p15.1) / HNRNPH1 (5q35.3)HNRNPH1 5q35.3 / ERG 21q22.2HNRNPH1 5q35.3 / RNF130 5q35.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPH1   5041
Cards
Entrez_Gene (NCBI)HNRNPH1  3187  heterogeneous nuclear ribonucleoprotein H1
AliasesHNRPH; HNRPH1; hnRNPH
GeneCards (Weizmann)HNRNPH1
Ensembl hg19 (Hinxton)ENSG00000169045 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169045 [Gene_View]  chr5:179614178-179623710 [Contig_View]  HNRNPH1 [Vega]
ICGC DataPortalENSG00000169045
TCGA cBioPortalHNRNPH1
AceView (NCBI)HNRNPH1
Genatlas (Paris)HNRNPH1
WikiGenes3187
SOURCE (Princeton)HNRNPH1
Genetics Home Reference (NIH)HNRNPH1
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPH1  -     chr5:179614178-179623710 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPH1  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblHNRNPH1 - 5q35.3 [CytoView hg19]  HNRNPH1 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIHNRNPH1 [Mapview hg19]  HNRNPH1 [Mapview hg38]
OMIM601035   
Gene and transcription
Genbank (Entrez)AK092273 AK124530 AK298193 AK307693 AK311021
RefSeq transcript (Entrez)NM_001257293 NM_005520
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPH1
Cluster EST : UnigeneHs.604001 [ NCBI ]
CGAP (NCI)Hs.604001
Alternative Splicing GalleryENSG00000169045
Gene ExpressionHNRNPH1 [ NCBI-GEO ]   HNRNPH1 [ EBI - ARRAY_EXPRESS ]   HNRNPH1 [ SEEK ]   HNRNPH1 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPH1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3187
GTEX Portal (Tissue expression)HNRNPH1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31943   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31943  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31943
Splice isoforms : SwissVarP31943
PhosPhoSitePlusP31943
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom    Znf_CHHC   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-RNPHF (PF08080)   
Domain families : Pfam (NCBI)pfam00076    pfam08080   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPH1
DMDM Disease mutations3187
Blocks (Seattle)HNRNPH1
PDB (SRS)2LXU   
PDB (PDBSum)2LXU   
PDB (IMB)2LXU   
PDB (RSDB)2LXU   
Structural Biology KnowledgeBase2LXU   
SCOP (Structural Classification of Proteins)2LXU   
CATH (Classification of proteins structures)2LXU   
SuperfamilyP31943
Human Protein AtlasENSG00000169045
Peptide AtlasP31943
HPRD03021
IPI###############################################################################################################################################################################################################################################################   
Protein Interaction databases
DIP (DOE-UCLA)P31943
IntAct (EBI)P31943
FunCoupENSG00000169045
BioGRIDHNRNPH1
STRING (EMBL)HNRNPH1
ZODIACHNRNPH1
Ontologies - Pathways
QuickGOP31943
Ontology : AmiGOmRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  RNA processing  poly(U) RNA binding  fibroblast growth factor receptor signaling pathway  gene expression  membrane  regulation of RNA splicing  catalytic step 2 spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  RNA processing  poly(U) RNA binding  fibroblast growth factor receptor signaling pathway  gene expression  membrane  regulation of RNA splicing  catalytic step 2 spliceosome  
NDEx NetworkHNRNPH1
Atlas of Cancer Signalling NetworkHNRNPH1
Wikipedia pathwaysHNRNPH1
Orthology - Evolution
OrthoDB3187
GeneTree (enSembl)ENSG00000169045
Phylogenetic Trees/Animal Genes : TreeFamHNRNPH1
HOVERGENP31943
HOGENOMP31943
Homologs : HomoloGeneHNRNPH1
Homology/Alignments : Family Browser (UCSC)HNRNPH1
Gene fusions - Rearrangements
Fusion : MitelmanHNRNPH1/ERG [5q35.3/21q22.2]  
Fusion : MitelmanHNRNPH1/MLLT10 [5q35.3/10p12.31]  [t(5;10)(q35;p12)]  
Fusion : MitelmanHNRNPH1/RNF130 [5q35.3/5q35.3]  [t(5;5)(q35;q35)]  
Fusion : MitelmanHNRNPH1/VAPA [5q35.3/18p11.22]  [t(5;18)(q35;p11)]  
Fusion: TCGAHNRNPH1 5q35.3 ERG 21q22.2 LAML
Fusion: TCGAHNRNPH1 5q35.3 RNF130 5q35.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPH1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPH1
dbVarHNRNPH1
ClinVarHNRNPH1
1000_GenomesHNRNPH1 
Exome Variant ServerHNRNPH1
ExAC (Exome Aggregation Consortium)HNRNPH1 (select the gene name)
Genetic variants : HAPMAP3187
Genomic Variants (DGV)HNRNPH1 [DGVbeta]
DECIPHERHNRNPH1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPH1 
Mutations
ICGC Data PortalHNRNPH1 
TCGA Data PortalHNRNPH1 
Broad Tumor PortalHNRNPH1
OASIS PortalHNRNPH1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPH1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPH1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPH1
DgiDB (Drug Gene Interaction Database)HNRNPH1
DoCM (Curated mutations)HNRNPH1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPH1 (select a term)
intoGenHNRNPH1
Cancer3DHNRNPH1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601035   
Orphanet14434   
MedgenHNRNPH1
Genetic Testing Registry HNRNPH1
NextProtP31943 [Medical]
TSGene3187
GENETestsHNRNPH1
Target ValidationHNRNPH1
Huge Navigator HNRNPH1 [HugePedia]
snp3D : Map Gene to Disease3187
BioCentury BCIQHNRNPH1
ClinGenHNRNPH1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3187
Chemical/Pharm GKB GenePA162391284
Clinical trialHNRNPH1
Miscellaneous
canSAR (ICR)HNRNPH1 (select the gene name)
Probes
Litterature
PubMed148 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPH1
EVEXHNRNPH1
GoPubMedHNRNPH1
iHOPHNRNPH1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:37:12 CEST 2017

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