Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNRNPH2 (heterogeneous nuclear ribonucleoprotein H2)

Identity

Alias_namesHNRPH2
Alias_symbol (synonym)hnRNPH'
FTP3
HNRPH'
Other aliasMRXSB
NRPH2
HGNC (Hugo) HNRNPH2
LocusID (NCBI) 3188
Atlas_Id 52200
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101408133 and ends at 101414140 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GLA (Xq22.1) / HNRNPH2 (Xq22.1)GLA Xq22.1 / HNRNPH2 Xq22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  GLA/HNRNPH2 (Xq22)


External links

Nomenclature
HGNC (Hugo)HNRNPH2   5042
Cards
Entrez_Gene (NCBI)HNRNPH2  3188  heterogeneous nuclear ribonucleoprotein H2
AliasesFTP3; HNRPH'; HNRPH2; MRXSB; 
NRPH2; hnRNPH'
GeneCards (Weizmann)HNRNPH2
Ensembl hg19 (Hinxton)ENSG00000126945 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126945 [Gene_View]  ENSG00000126945 [Sequence]  chrX:101408133-101414140 [Contig_View]  HNRNPH2 [Vega]
ICGC DataPortalENSG00000126945
TCGA cBioPortalHNRNPH2
AceView (NCBI)HNRNPH2
Genatlas (Paris)HNRNPH2
WikiGenes3188
SOURCE (Princeton)HNRNPH2
Genetics Home Reference (NIH)HNRNPH2
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPH2  -     chrX:101408133-101414140 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPH2  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblHNRNPH2 - Xq22.1 [CytoView hg19]  HNRNPH2 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIHNRNPH2 [Mapview hg19]  HNRNPH2 [Mapview hg38]
OMIM300610   300986   
Gene and transcription
Genbank (Entrez)AA758785 AK294144 AK298133 BC130343 BC130345
RefSeq transcript (Entrez)NM_001032393 NM_019597
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPH2
Cluster EST : UnigeneHs.432485 [ NCBI ]
CGAP (NCI)Hs.432485
Alternative Splicing GalleryENSG00000126945
Gene ExpressionHNRNPH2 [ NCBI-GEO ]   HNRNPH2 [ EBI - ARRAY_EXPRESS ]   HNRNPH2 [ SEEK ]   HNRNPH2 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPH2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3188
GTEX Portal (Tissue expression)HNRNPH2
Human Protein AtlasENSG00000126945-HNRNPH2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP55795   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP55795  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP55795
Splice isoforms : SwissVarP55795
PhosPhoSitePlusP55795
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait_sf    RBD_domain_sf    RRM_dom    Znf_CHHC   
Domain families : Pfam (Sanger)RRM_1 (PF00076)    zf-RNPHF (PF08080)   
Domain families : Pfam (NCBI)pfam00076    pfam08080   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPH2
DMDM Disease mutations3188
Blocks (Seattle)HNRNPH2
PDB (SRS)1WEZ    1WG5   
PDB (PDBSum)1WEZ    1WG5   
PDB (IMB)1WEZ    1WG5   
PDB (RSDB)1WEZ    1WG5   
Structural Biology KnowledgeBase1WEZ    1WG5   
SCOP (Structural Classification of Proteins)1WEZ    1WG5   
CATH (Classification of proteins structures)1WEZ    1WG5   
SuperfamilyP55795
Human Protein Atlas [tissue]ENSG00000126945-HNRNPH2 [tissue]
Peptide AtlasP55795
HPRD03022
IPIIPI00026230   IPI00940955   
Protein Interaction databases
DIP (DOE-UCLA)P55795
IntAct (EBI)P55795
FunCoupENSG00000126945
BioGRIDHNRNPH2
STRING (EMBL)HNRNPH2
ZODIACHNRNPH2
Ontologies - Pathways
QuickGOP55795
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  membrane  RNA metabolic process  ribonucleoprotein complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  nucleoplasm  cytosol  membrane  RNA metabolic process  ribonucleoprotein complex  
NDEx NetworkHNRNPH2
Atlas of Cancer Signalling NetworkHNRNPH2
Wikipedia pathwaysHNRNPH2
Orthology - Evolution
OrthoDB3188
GeneTree (enSembl)ENSG00000126945
Phylogenetic Trees/Animal Genes : TreeFamHNRNPH2
HOVERGENP55795
HOGENOMP55795
Homologs : HomoloGeneHNRNPH2
Homology/Alignments : Family Browser (UCSC)HNRNPH2
Gene fusions - Rearrangements
Fusion : MitelmanGLA/HNRNPH2 [Xq22.1/Xq22.1]  [t(X;X)(q22;q22)]  
Fusion PortalGLA Xq22.1 HNRNPH2 Xq22.1 BRCA
Fusion : QuiverHNRNPH2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPH2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPH2
dbVarHNRNPH2
ClinVarHNRNPH2
1000_GenomesHNRNPH2 
Exome Variant ServerHNRNPH2
ExAC (Exome Aggregation Consortium)ENSG00000126945
GNOMAD BrowserENSG00000126945
Varsome BrowserHNRNPH2
Genetic variants : HAPMAP3188
Genomic Variants (DGV)HNRNPH2 [DGVbeta]
DECIPHERHNRNPH2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPH2 
Mutations
ICGC Data PortalHNRNPH2 
TCGA Data PortalHNRNPH2 
Broad Tumor PortalHNRNPH2
OASIS PortalHNRNPH2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPH2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPH2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch HNRNPH2
DgiDB (Drug Gene Interaction Database)HNRNPH2
DoCM (Curated mutations)HNRNPH2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPH2 (select a term)
intoGenHNRNPH2
Cancer3DHNRNPH2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300610    300986   
Orphanet
DisGeNETHNRNPH2
MedgenHNRNPH2
Genetic Testing Registry HNRNPH2
NextProtP55795 [Medical]
TSGene3188
GENETestsHNRNPH2
Target ValidationHNRNPH2
Huge Navigator HNRNPH2 [HugePedia]
snp3D : Map Gene to Disease3188
BioCentury BCIQHNRNPH2
ClinGenHNRNPH2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3188
Chemical/Pharm GKB GenePA162391316
Clinical trialHNRNPH2
Miscellaneous
canSAR (ICR)HNRNPH2 (select the gene name)
Probes
Litterature
PubMed69 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPH2
EVEXHNRNPH2
GoPubMedHNRNPH2
iHOPHNRNPH2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Aug 27 11:27:27 CEST 2018

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