Atlas of Genetics and Cytogenetics in Oncology and Haematology


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HNRNPH3 (heterogeneous nuclear ribonucleoprotein H3 (2H9))

Identity

Alias_namesHNRPH3
heterogeneous nuclear ribonucleoprotein H3 (2H9)
Alias_symbol (synonym)2H9
Other alias
HGNC (Hugo) HNRNPH3
LocusID (NCBI) 3189
Atlas_Id 64373
Location 10q21.3  [Link to chromosome band 10q21]
Location_base_pair Starts at 70091768 and ends at 70102953 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AGPAT5 (8p23.1) / HNRNPH3 (10q21.3)COPS5 (8q13.1) / HNRNPH3 (10q21.3)DDX50 (10q22.1) / HNRNPH3 (10q21.3)
EML3 (11q12.3) / HNRNPH3 (10q21.3)HNRNPH3 (10q21.3) / ATAD1 (10q23.31)HNRNPH3 (10q21.3) / CDC73 (1q31.2)
HNRNPH3 (10q21.3) / EPHX1 (1q42.12)HNRNPH3 (10q21.3) / HNRNPH3 (10q21.3)HNRNPH3 (10q21.3) / HSD11B1 (1q32.2)
HNRNPH3 (10q21.3) / NDUFA9 (12p13.32)HNRNPH3 (10q21.3) / RDH11 (14q24.1)RUFY2 (10q21.3) / HNRNPH3 (10q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPH3   5043
Cards
Entrez_Gene (NCBI)HNRNPH3  3189  heterogeneous nuclear ribonucleoprotein H3 (2H9)
Aliases2H9; HNRPH3
GeneCards (Weizmann)HNRNPH3
Ensembl hg19 (Hinxton)ENSG00000096746 [Gene_View]  chr10:70091768-70102953 [Contig_View]  HNRNPH3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000096746 [Gene_View]  chr10:70091768-70102953 [Contig_View]  HNRNPH3 [Vega]
ICGC DataPortalENSG00000096746
TCGA cBioPortalHNRNPH3
AceView (NCBI)HNRNPH3
Genatlas (Paris)HNRNPH3
WikiGenes3189
SOURCE (Princeton)HNRNPH3
Genetics Home Reference (NIH)HNRNPH3
Genomic and cartography
GoldenPath hg19 (UCSC)HNRNPH3  -     chr10:70091768-70102953 +  10q21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)HNRNPH3  -     10q21.3   [Description]    (hg38-Dec_2013)
EnsemblHNRNPH3 - 10q21.3 [CytoView hg19]  HNRNPH3 - 10q21.3 [CytoView hg38]
Mapping of homologs : NCBIHNRNPH3 [Mapview hg19]  HNRNPH3 [Mapview hg38]
OMIM602324   
Gene and transcription
Genbank (Entrez)AF052131 AF132361 AF132362 AF132363 AF132364
RefSeq transcript (Entrez)NM_012207 NM_021644
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_030059 NW_004929376
Consensus coding sequences : CCDS (NCBI)HNRNPH3
Cluster EST : UnigeneHs.643472 [ NCBI ]
CGAP (NCI)Hs.643472
Alternative Splicing GalleryENSG00000096746
Gene ExpressionHNRNPH3 [ NCBI-GEO ]   HNRNPH3 [ EBI - ARRAY_EXPRESS ]   HNRNPH3 [ SEEK ]   HNRNPH3 [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPH3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)3189
GTEX Portal (Tissue expression)HNRNPH3
Protein : pattern, domain, 3D structure
UniProt/SwissProtP31942   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP31942  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP31942
Splice isoforms : SwissVarP31942
PhosPhoSitePlusP31942
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPH3
DMDM Disease mutations3189
Blocks (Seattle)HNRNPH3
SuperfamilyP31942
Human Protein AtlasENSG00000096746
Peptide AtlasP31942
HPRD03818
IPIIPI00013877   IPI00216492   IPI00216493   IPI00216494   IPI00216495   IPI00216496   IPI00908651   
Protein Interaction databases
DIP (DOE-UCLA)P31942
IntAct (EBI)P31942
FunCoupENSG00000096746
BioGRIDHNRNPH3
STRING (EMBL)HNRNPH3
ZODIACHNRNPH3
Ontologies - Pathways
QuickGOP31942
Ontology : AmiGOnucleotide binding  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  spliceosomal complex  spliceosomal complex  RNA processing  RNA splicing  epithelial cell differentiation  poly(A) RNA binding  
Ontology : EGO-EBInucleotide binding  mRNA splicing, via spliceosome  RNA binding  protein binding  nucleus  nucleoplasm  spliceosomal complex  spliceosomal complex  RNA processing  RNA splicing  epithelial cell differentiation  poly(A) RNA binding  
NDEx NetworkHNRNPH3
Atlas of Cancer Signalling NetworkHNRNPH3
Wikipedia pathwaysHNRNPH3
Orthology - Evolution
OrthoDB3189
GeneTree (enSembl)ENSG00000096746
Phylogenetic Trees/Animal Genes : TreeFamHNRNPH3
HOVERGENP31942
HOGENOMP31942
Homologs : HomoloGeneHNRNPH3
Homology/Alignments : Family Browser (UCSC)HNRNPH3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPH3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPH3
dbVarHNRNPH3
ClinVarHNRNPH3
1000_GenomesHNRNPH3 
Exome Variant ServerHNRNPH3
ExAC (Exome Aggregation Consortium)HNRNPH3 (select the gene name)
Genetic variants : HAPMAP3189
Genomic Variants (DGV)HNRNPH3 [DGVbeta]
DECIPHER (Syndromes)10:70091768-70102953  ENSG00000096746
CONAN: Copy Number AnalysisHNRNPH3 
Mutations
ICGC Data PortalHNRNPH3 
TCGA Data PortalHNRNPH3 
Broad Tumor PortalHNRNPH3
OASIS PortalHNRNPH3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICHNRNPH3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDHNRNPH3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch HNRNPH3
DgiDB (Drug Gene Interaction Database)HNRNPH3
DoCM (Curated mutations)HNRNPH3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPH3 (select a term)
intoGenHNRNPH3
Cancer3DHNRNPH3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602324   
Orphanet
MedgenHNRNPH3
Genetic Testing Registry HNRNPH3
NextProtP31942 [Medical]
TSGene3189
GENETestsHNRNPH3
Huge Navigator HNRNPH3 [HugePedia]
snp3D : Map Gene to Disease3189
BioCentury BCIQHNRNPH3
ClinGenHNRNPH3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD3189
Chemical/Pharm GKB GenePA162391325
Clinical trialHNRNPH3
Miscellaneous
canSAR (ICR)HNRNPH3 (select the gene name)
Probes
Litterature
PubMed67 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPH3
EVEXHNRNPH3
GoPubMedHNRNPH3
iHOPHNRNPH3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:08:02 CET 2017

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