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HNRNPLL (heterogeneous nuclear ribonucleoprotein L like)

Identity

Alias_namesHNRPLL
Other aliasSRRF
HGNC (Hugo) HNRNPLL
LocusID (NCBI) 92906
Atlas_Id 64375
Location 2p22.1  [Link to chromosome band 2p22]
Location_base_pair Starts at 38563186 and ends at 38603036 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATL2 (2p22.2) / HNRNPLL (2p22.1)EXOC6B (2p13.2) / HNRNPLL (2p22.1)HNRNPLL (2p22.1) / HNRNPLL (2p22.1)
PRKAB2 (1q21.1) / HNRNPLL (2p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)HNRNPLL   25127
Cards
Entrez_Gene (NCBI)HNRNPLL  92906  heterogeneous nuclear ribonucleoprotein L like
AliasesHNRPLL; SRRF
GeneCards (Weizmann)HNRNPLL
Ensembl hg19 (Hinxton)ENSG00000143889 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143889 [Gene_View]  chr2:38563186-38603036 [Contig_View]  HNRNPLL [Vega]
ICGC DataPortalENSG00000143889
TCGA cBioPortalHNRNPLL
AceView (NCBI)HNRNPLL
Genatlas (Paris)HNRNPLL
WikiGenes92906
SOURCE (Princeton)HNRNPLL
Genetics Home Reference (NIH)HNRNPLL
Genomic and cartography
GoldenPath hg38 (UCSC)HNRNPLL  -     chr2:38563186-38603036 -  2p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)HNRNPLL  -     2p22.1   [Description]    (hg19-Feb_2009)
EnsemblHNRNPLL - 2p22.1 [CytoView hg19]  HNRNPLL - 2p22.1 [CytoView hg38]
Mapping of homologs : NCBIHNRNPLL [Mapview hg19]  HNRNPLL [Mapview hg38]
OMIM611208   
Gene and transcription
Genbank (Entrez)AK000155 AK291462 AK292259 AL512692 AY236962
RefSeq transcript (Entrez)NM_001142650 NM_138394
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)HNRNPLL
Cluster EST : UnigeneHs.445497 [ NCBI ]
CGAP (NCI)Hs.445497
Alternative Splicing GalleryENSG00000143889
Gene ExpressionHNRNPLL [ NCBI-GEO ]   HNRNPLL [ EBI - ARRAY_EXPRESS ]   HNRNPLL [ SEEK ]   HNRNPLL [ MEM ]
Gene Expression Viewer (FireBrowse)HNRNPLL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92906
GTEX Portal (Tissue expression)HNRNPLL
Human Protein AtlasENSG00000143889-HNRNPLL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WVV9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WVV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WVV9
Splice isoforms : SwissVarQ8WVV9
PhosPhoSitePlusQ8WVV9
Domaine pattern : Prosite (Expaxy)RRM (PS50102)   
Domains : Interpro (EBI)HnRNP-L/PTB    Nucleotide-bd_a/b_plait    RRM_dom   
Domain families : Pfam (Sanger)RRM_1 (PF00076)   
Domain families : Pfam (NCBI)pfam00076   
Domain families : Smart (EMBL)RRM (SM00360)  
Conserved Domain (NCBI)HNRNPLL
DMDM Disease mutations92906
Blocks (Seattle)HNRNPLL
SuperfamilyQ8WVV9
Human Protein Atlas [tissue]ENSG00000143889-HNRNPLL [tissue]
Peptide AtlasQ8WVV9
HPRD13667
IPIIPI00103247   IPI00554613   IPI00479814   IPI00470410   IPI00915954   IPI00916689   IPI00916722   IPI00745396   
Protein Interaction databases
DIP (DOE-UCLA)Q8WVV9
IntAct (EBI)Q8WVV9
FunCoupENSG00000143889
BioGRIDHNRNPLL
STRING (EMBL)HNRNPLL
ZODIACHNRNPLL
Ontologies - Pathways
QuickGOQ8WVV9
Ontology : AmiGORNA binding  mRNA binding  protein binding  nucleus  mRNA processing  membrane  intracellular ribonucleoprotein complex  positive regulation of RNA splicing  
Ontology : EGO-EBIRNA binding  mRNA binding  protein binding  nucleus  mRNA processing  membrane  intracellular ribonucleoprotein complex  positive regulation of RNA splicing  
NDEx NetworkHNRNPLL
Atlas of Cancer Signalling NetworkHNRNPLL
Wikipedia pathwaysHNRNPLL
Orthology - Evolution
OrthoDB92906
GeneTree (enSembl)ENSG00000143889
Phylogenetic Trees/Animal Genes : TreeFamHNRNPLL
HOVERGENQ8WVV9
HOGENOMQ8WVV9
Homologs : HomoloGeneHNRNPLL
Homology/Alignments : Family Browser (UCSC)HNRNPLL
Gene fusions - Rearrangements
Tumor Fusion PortalHNRNPLL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerHNRNPLL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)HNRNPLL
dbVarHNRNPLL
ClinVarHNRNPLL
1000_GenomesHNRNPLL 
Exome Variant ServerHNRNPLL
ExAC (Exome Aggregation Consortium)ENSG00000143889
GNOMAD BrowserENSG00000143889
Genetic variants : HAPMAP92906
Genomic Variants (DGV)HNRNPLL [DGVbeta]
DECIPHERHNRNPLL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisHNRNPLL 
Mutations
ICGC Data PortalHNRNPLL 
TCGA Data PortalHNRNPLL 
Broad Tumor PortalHNRNPLL
OASIS PortalHNRNPLL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDHNRNPLL
BioMutasearch HNRNPLL
DgiDB (Drug Gene Interaction Database)HNRNPLL
DoCM (Curated mutations)HNRNPLL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)HNRNPLL (select a term)
intoGenHNRNPLL
Cancer3DHNRNPLL(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611208   
Orphanet
DisGeNETHNRNPLL
MedgenHNRNPLL
Genetic Testing Registry HNRNPLL
NextProtQ8WVV9 [Medical]
TSGene92906
GENETestsHNRNPLL
Target ValidationHNRNPLL
Huge Navigator HNRNPLL [HugePedia]
snp3D : Map Gene to Disease92906
BioCentury BCIQHNRNPLL
ClinGenHNRNPLL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92906
Chemical/Pharm GKB GenePA134987080
Clinical trialHNRNPLL
Miscellaneous
canSAR (ICR)HNRNPLL (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineHNRNPLL
EVEXHNRNPLL
GoPubMedHNRNPLL
iHOPHNRNPLL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:04:41 CET 2017

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